Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000252.1-P | Field mustard | cytosol | 80.6 | 79.41 |
| CDY35387 | Canola | cytosol | 80.22 | 79.04 |
| CDY22552 | Canola | cytosol | 77.99 | 76.84 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 41.42 | 44.05 |
| PGSC0003DMT400016174 | Potato | nucleus | 27.99 | 33.94 |
| PGSC0003DMT400074529 | Potato | cytosol | 27.24 | 30.29 |
| PGSC0003DMT400016177 | Potato | nucleus | 26.87 | 30.0 |
| PGSC0003DMT400016178 | Potato | cytosol | 27.99 | 29.76 |
| PGSC0003DMT400074527 | Potato | cytosol | 26.87 | 29.51 |
| PGSC0003DMT400074525 | Potato | cytosol | 26.87 | 29.51 |
| PGSC0003DMT400074528 | Potato | nucleus | 26.49 | 28.98 |
| Solyc01g073810.2.1 | Tomato | nucleus | 26.12 | 28.11 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 15.3 | 28.08 |
| PGSC0003DMT400074526 | Potato | nucleus | 27.61 | 27.82 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 25.37 | 27.53 |
| PGSC0003DMT400016183 | Potato | nucleus | 29.48 | 27.53 |
| Solyc01g073800.2.1 | Tomato | nucleus | 25.37 | 27.42 |
| Solyc01g073820.2.1 | Tomato | cytosol, extracellular, nucleus | 26.49 | 27.41 |
| AT5G40590.1 | Thale cress | nucleus | 23.88 | 27.35 |
| PGSC0003DMT400074531 | Potato | nucleus | 26.49 | 27.31 |
| AT2G44390.1 | Thale cress | mitochondrion | 20.9 | 26.79 |
| AT2G44370.1 | Thale cress | mitochondrion | 24.63 | 26.4 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 25.37 | 26.36 |
| AT2G28270.1 | Thale cress | nucleus | 23.88 | 25.81 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 23.51 | 25.4 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.73 | 24.84 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 22.76 | 24.4 |
| PGSC0003DMT400016188 | Potato | nucleus | 27.61 | 20.27 |
| PGSC0003DMT400074532 | Potato | nucleus | 29.48 | 20.1 |
| Solyc01g073780.2.1 | Tomato | nucleus | 29.1 | 19.65 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 28.73 | 19.4 |
| Solyc01g073840.1.1 | Tomato | nucleus | 28.36 | 16.56 |
| PGSC0003DMT400016187 | Potato | nucleus | 27.99 | 16.34 |
| AT2G27660.1 | Thale cress | plastid | 24.25 | 9.05 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818806 | UniProt:A0A178VY89 | ProteinID:AAB63538.1 | ProteinID:AEC10066.1 | ArrayExpress:AT2G42060 |
| EnsemblPlantsGene:AT2G42060 | RefSeq:AT2G42060 | TAIR:AT2G42060 | RefSeq:AT2G42060-TAIR-G | EnsemblPlants:AT2G42060.1 | TAIR:AT2G42060.1 |
| Unigene:At.20272 | EMBL:BT010858 | EMBL:BT012616 | ncoils:Coil | InterPro:DC1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 |
| GO:GO:0046872 | GO:GO:0098869 | InterPro:IPR002219 | RefSeq:NP_181736.1 | ProteinID:OAP09772.1 | UniProt:P93741 |
| InterPro:PE/DAG-bd | PFAM:PF03107 | PO:PO:0000263 | PO:PO:0000293 | PO:PO:0009005 | PFscan:PS50081 |
| PANTHER:PTHR13871 | PANTHER:PTHR13871:SF59 | SMART:SM00109 | SUPFAM:SSF57889 | UniParc:UPI00000AB550 | SEG:seg |
Description
At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
Coordinates
chr2:+:17548053..17549121
Molecular Weight (calculated)
29362.7 Da
IEP (calculated)
5.911
GRAVY (calculated)
-0.152
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.