Factsheet for Solyc01g073830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016174	Potato	nucleus	57.1	80.09
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	73.55	57.43
Solyc01g073800.2.1	Tomato	nucleus	35.81	44.76
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	36.45	43.63
Solyc01g073810.2.1	Tomato	nucleus	33.23	41.37
Solyc01g073840.1.1	Tomato	nucleus	56.77	38.34
Solyc01g073880.2.1	Tomato	cytosol	20.32	32.64
Solyc01g073850.1.1	Tomato	cytosol	10.97	30.63
VIT_08s0007g06620.t01	Wine grape	cytosol	23.55	28.97
AT2G42060.1	Thale cress	cytosol	24.84	28.73
Solyc01g073780.2.1	Tomato	nucleus	36.77	28.72
CDY35387	Canola	cytosol	24.84	28.31
Bra000252.1-P	Field mustard	cytosol	24.84	28.31
CDY22552	Canola	cytosol	24.19	27.57
Solyc01g073860.2.1	Tomato	cytosol	20.0	26.27
Solyc06g072460.1.1	Tomato	cytosol	20.97	17.57
Solyc03g097960.1.1	Tomato	cytosol	20.0	17.56
Solyc01g073890.2.1	Tomato	cytosol	21.29	17.32
Solyc12g038680.1.1	Tomato	nucleus	11.94	17.13
Solyc02g068680.1.1	Tomato	nucleus	22.58	15.18
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	21.29	12.38

Protein Annotations

EnsemblPlants:Solyc01g073830.1.1	EnsemblPlantsGene:Solyc01g073830.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869
InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60	PFAM:PF03107	SEG:seg
SUPFAM:SSF57889	UniParc:UPI0002761939	UniProt:K4AXC8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1:-:81179423..81180355

Molecular Weight (calculated)

35357.0 Da

IEP (calculated)

4.576

GRAVY (calculated)

-0.595

Length

310 amino acids

Sequence
(BLAST)

001: MGREKRTCQG KQHFSHPHIL KPIVNPTETL TCNACEHPNI TSNFYGCNTC QYFLHENCLN APRFLNHSSH PSHHLTLLPT PTYSNRSYTC KACGSAGKGC
101: SFSCACCEFD THMHCALLPQ TVVLPQHHHH ELELIFESPF YDDGNTVFVC DLCRDNVDLN NWFYYCADCD FGTHLECGIS KTVSQERPEL LGNKPRENPV
201: VIRKTEEVPV KNEKEINQEE EAEEEEAEEE EEEEEELNYP SSILIDKHPH ELELCFGSPY EDKDTLFACD MCNIVMDSDE SLYYCADCDF VSHLHCASPD
301: ADVLPSSHPR

Best Arabidopsis Sequence Match ( AT2G27660.1 )
(BLAST)

001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.