Factsheet for Solyc01g073840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016187	Potato	nucleus	85.4	85.4
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	38.34	56.77
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	25.05	44.4
Solyc01g073800.2.1	Tomato	nucleus	23.53	43.55
Solyc01g073810.2.1	Tomato	nucleus	21.79	40.16
Solyc01g073850.1.1	Tomato	cytosol	8.06	33.33
Solyc01g073880.2.1	Tomato	cytosol	13.29	31.61
Solyc01g073780.2.1	Tomato	nucleus	25.71	29.72
AT2G42060.1	Thale cress	cytosol	16.56	28.36
CDY22552	Canola	cytosol	16.78	28.31
Solyc01g073860.2.1	Tomato	cytosol	14.38	27.97
VIT_08s0007g06620.t01	Wine grape	cytosol	15.25	27.78
CDY35387	Canola	cytosol	16.34	27.57
Bra000252.1-P	Field mustard	cytosol	16.34	27.57
Solyc02g068680.1.1	Tomato	nucleus	19.61	19.52
Solyc12g038680.1.1	Tomato	nucleus	8.93	18.98
Solyc06g072460.1.1	Tomato	cytosol	14.6	18.11
Solyc03g097960.1.1	Tomato	cytosol	13.73	17.85
Solyc01g073890.2.1	Tomato	cytosol	14.16	17.06
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	18.74	16.14

Protein Annotations

MapMan:35.2	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0046872	GO:GO:0098869	UniProt:K4AXC9	PFAM:PF03107	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60
SMART:SM00249	SUPFAM:SSF57889	EnsemblPlantsGene:Solyc01g073840.1	EnsemblPlants:Solyc01g073840.1.1	UniParc:UPI000276193A	InterPro:Znf_PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:81182313..81183692

Molecular Weight (calculated)

52645.7 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.584

Length

459 amino acids

Sequence
(BLAST)

001: MGRGKQTCEG KQHFSHPHIL IPIVNPTETL TCNACEQPNI TSNFYGCNTC QYFLHENCLN APRFLDHSSH PSHHLTLLPA PTYSNRSFTC KACGSAGNGC
101: SFSCACCDFD IHVQCALLPQ TVVLPQQHHH ELELIFESPY DDDADESTVF ICDVCHDNAD LSNWLYYCAD CDFGTHLKCA ISKSVRQQEP KQRKTEKEPI
201: KIQEINQKEE NRGITTSKSK NLKHFSHSHP LELCKVQQSN EIICSGCEDE LCDTANYKCT KSICEFTLHK SCFELPEKIQ HSSHPNHPLT LYPTSPERRL
301: YFGCNACGEI PNSFVYECLE CNFSLHAKCA TSLAENITRE DHQHSLKLQY QWPFPSEDSV DIYCNVCDGY CNDSLWLYYC AECKLGTHLK CVTVKKEEDS
401: SLENEKEPVH EENMTNAERL MMATIELQEH QARMNFRSNM AHQNAQFMNN LFSYPYRYY

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.