Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074526 | Potato | nucleus | 90.35 | 87.97 |
| Solyc01g073800.2.1 | Tomato | nucleus | 65.64 | 68.55 |
| Solyc01g073810.2.1 | Tomato | nucleus | 61.78 | 64.26 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 43.63 | 36.45 |
| Solyc01g073880.2.1 | Tomato | cytosol | 22.01 | 29.53 |
| Bra000252.1-P | Field mustard | cytosol | 29.34 | 27.94 |
| CDY35387 | Canola | cytosol | 29.34 | 27.94 |
| CDY22552 | Canola | cytosol | 28.57 | 27.21 |
| Solyc01g073850.1.1 | Tomato | cytosol | 11.58 | 27.03 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 25.87 | 26.59 |
| AT2G42060.1 | Thale cress | cytosol | 27.41 | 26.49 |
| Solyc01g073860.2.1 | Tomato | cytosol | 23.94 | 26.27 |
| Solyc01g073840.1.1 | Tomato | nucleus | 44.4 | 25.05 |
| Solyc01g073780.2.1 | Tomato | nucleus | 35.91 | 23.43 |
| Solyc03g097960.1.1 | Tomato | cytosol | 27.41 | 20.11 |
| Solyc06g072460.1.1 | Tomato | cytosol | 25.48 | 17.84 |
| Solyc12g038680.1.1 | Tomato | nucleus | 14.67 | 17.59 |
| Solyc01g073890.2.1 | Tomato | cytosol | 25.87 | 17.59 |
| Solyc02g068680.1.1 | Tomato | nucleus | 23.55 | 13.23 |
| Solyc08g014370.1.1 | Tomato | nucleus, plasma membrane, plastid | 25.48 | 12.38 |
Protein Annotations
| EnsemblPlants:Solyc01g073820.2.1 | EnsemblPlantsGene:Solyc01g073820.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 |
| InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | SEG:seg | SUPFAM:SSF57889 |
| UniParc:UPI0002761938 | UniProt:K4AXC7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:81172221..81173167
Molecular Weight (calculated)
29146.2 Da
IEP (calculated)
7.079
GRAVY (calculated)
-0.531
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQNRGTNA GPQDKQHFSH QHALKLIVNP TETILTCNAC EKPNNTNKPF YGCNTCQYFL HENCFNAPRF LNHASHPSHP LTLLPRATYS SCSFNCKACD
101: TVGNGFCFSC ACCEFDIHLQ CASLQSLILI DKHPHQLELN FGSPYEDKDS EYVCDICSEI MNKENWLYYC GGCDFASHLH CAITSPEVGV FAKQQQRPVP
201: NQNQNSNSNR NPNATVDMIN SANEAHEQIM AAQLRAQIAA RGREACLDLV TPRRRYGYY
101: TVGNGFCFSC ACCEFDIHLQ CASLQSLILI DKHPHQLELN FGSPYEDKDS EYVCDICSEI MNKENWLYYC GGCDFASHLH CAITSPEVGV FAKQQQRPVP
201: NQNQNSNSNR NPNATVDMIN SANEAHEQIM AAQLRAQIAA RGREACLDLV TPRRRYGYY
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.