Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 84.27 | 81.01 |
| PGSC0003DMT400074531 | Potato | nucleus | 74.6 | 71.15 |
| Solyc01g073810.2.1 | Tomato | nucleus | 66.53 | 66.27 |
| Solyc01g073820.2.1 | Tomato | cytosol, extracellular, nucleus | 68.55 | 65.64 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 44.76 | 35.81 |
| Solyc01g073880.2.1 | Tomato | cytosol | 24.6 | 31.61 |
| Solyc01g073850.1.1 | Tomato | cytosol | 12.9 | 28.83 |
| Bra000252.1-P | Field mustard | cytosol | 28.63 | 26.1 |
| CDY35387 | Canola | cytosol | 28.63 | 26.1 |
| CDY22552 | Canola | cytosol | 28.23 | 25.74 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 25.81 | 25.4 |
| AT2G42060.1 | Thale cress | cytosol | 27.42 | 25.37 |
| Solyc01g073780.2.1 | Tomato | nucleus | 37.9 | 23.68 |
| Solyc01g073840.1.1 | Tomato | nucleus | 43.55 | 23.53 |
| Solyc01g073860.2.1 | Tomato | cytosol | 22.18 | 23.31 |
| Solyc03g097960.1.1 | Tomato | cytosol | 25.0 | 17.56 |
| Solyc01g073890.2.1 | Tomato | cytosol | 26.61 | 17.32 |
| Solyc06g072460.1.1 | Tomato | cytosol | 25.4 | 17.03 |
| Solyc12g038680.1.1 | Tomato | nucleus | 14.52 | 16.67 |
| Solyc02g068680.1.1 | Tomato | nucleus | 22.98 | 12.36 |
| Solyc08g014370.1.1 | Tomato | nucleus, plasma membrane, plastid | 24.6 | 11.44 |
Protein Annotations
| EnsemblPlants:Solyc01g073800.2.1 | EnsemblPlantsGene:Solyc01g073800.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 |
| InterPro:DC1 | InterPro:Znf_FYVE_PHD | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | SEG:seg |
| SUPFAM:SSF57889 | SUPFAM:SSF57903 | UniParc:UPI0002761936 | UniProt:K4AXC5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1:-:81157477..81158393
Molecular Weight (calculated)
27625.3 Da
IEP (calculated)
7.035
GRAVY (calculated)
-0.488
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQNKSSNA SCEGKQHFSH PHILKPIVNR HETLTCNACE QPNNNKPNFR GCNSCQYFLH DNCFDAPRFL NHASHPSHPL TLHQIPSYSS RTYTCKACNS
101: AGNAFCFSCA ACEFDIHLQC ASCPSSILVD KHPHQLGLHF GSPYEDKNME YVCDICNEIM NKNDWLYYCA GCDFGSHLRC AITSPEVGVF PEQHRPSPNP
201: YSNSNLNPNP NAAVEMINSV NAAHERLIAA QIRAQFAARG QEAALDLI
101: AGNAFCFSCA ACEFDIHLQC ASCPSSILVD KHPHQLGLHF GSPYEDKNME YVCDICNEIM NKNDWLYYCA GCDFGSHLRC AITSPEVGVF PEQHRPSPNP
201: YSNSNLNPNP NAAVEMINSV NAAHERLIAA QIRAQFAARG QEAALDLI
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.