Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 78.46 | 79.07 |
| PGSC0003DMT400074527 | Potato | cytosol | 70.38 | 75.0 |
| Solyc01g073800.2.1 | Tomato | nucleus | 71.15 | 74.6 |
| PGSC0003DMT400016178 | Potato | cytosol | 71.92 | 74.21 |
| PGSC0003DMT400016177 | Potato | nucleus | 68.08 | 73.75 |
| PGSC0003DMT400074529 | Potato | cytosol | 68.08 | 73.44 |
| PGSC0003DMT400074525 | Potato | cytosol | 68.46 | 72.95 |
| PGSC0003DMT400074526 | Potato | nucleus | 68.85 | 67.29 |
| PGSC0003DMT400074528 | Potato | nucleus | 60.77 | 64.49 |
| PGSC0003DMT400016174 | Potato | nucleus | 42.69 | 50.23 |
| PGSC0003DMT400016183 | Potato | nucleus | 41.15 | 37.28 |
| PGSC0003DMT400016188 | Potato | nucleus | 42.69 | 30.41 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 43.08 | 28.21 |
| CDY35387 | Canola | cytosol | 28.08 | 26.84 |
| Bra000252.1-P | Field mustard | cytosol | 28.08 | 26.84 |
| AT2G42060.1 | Thale cress | cytosol | 27.31 | 26.49 |
| CDY22552 | Canola | cytosol | 27.69 | 26.47 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 24.23 | 25.0 |
| PGSC0003DMT400074532 | Potato | nucleus | 35.38 | 23.41 |
| PGSC0003DMT400016187 | Potato | nucleus | 40.0 | 22.66 |
| PGSC0003DMT400093177 | Potato | cytosol | 11.15 | 21.48 |
| PGSC0003DMT400083994 | Potato | nucleus | 26.92 | 19.83 |
| PGSC0003DMT400016180 | Potato | cytosol | 11.92 | 19.14 |
| PGSC0003DMT400069576 | Potato | cytosol | 25.77 | 18.11 |
| PGSC0003DMT400016143 | Potato | nucleus | 25.77 | 17.63 |
| PGSC0003DMT400048642 | Potato | cytosol | 3.85 | 16.67 |
| PGSC0003DMT400085165 | Potato | extracellular | 20.0 | 14.21 |
| PGSC0003DMT400027065 | Potato | nucleus | 23.08 | 13.02 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 25.38 | 12.31 |
| PGSC0003DMT400029742 | Potato | cytosol | 20.38 | 12.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074531 | EnsemblPlantsGene:PGSC0003DMG400028972 | Gene3D:3.30.40.10 | InterPro:DC1 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | PGSC:PGSC0003DMG400028972 | SEG:seg | SUPFAM:SSF57889 |
| UniParc:UPI000296DEFE | UniProt:M1CTU4 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028972]
Coordinates
chr1:+:66887988..66889035
Molecular Weight (calculated)
29053.7 Da
IEP (calculated)
7.097
GRAVY (calculated)
-0.612
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQNRGTNA GPQDKQHFSH SHILKLIMNP TETLNCNACE KPNNSHTPFY GCNTCQYFLH DNCFNAPRFI NHSSHPSHPL TLHQIPSYSS RSYTCKACGS
101: AGNGFCFSCA ACEFDIHLQC ASSPSSILVN SHLHQLELHF GSPYEDKNIK YNCDMCNVIM NRDDWLYYCA GCDFGSHLHC AITSPEVGVF PKQHRPIPNS
201: NSNSNPNPNP SQNSNSSWNS HANEAVEMIN SVNDDHDRLI AAQIRAQIEA RGRRAMLDSI
101: AGNGFCFSCA ACEFDIHLQC ASSPSSILVN SHLHQLELHF GSPYEDKNIK YNCDMCNVIM NRDDWLYYCA GCDFGSHLHC AITSPEVGVF PKQHRPIPNS
201: NSNSNPNPNP SQNSNSSWNS HANEAVEMIN SVNDDHDRLI AAQIRAQIEA RGRRAMLDSI
001: MASRPSVRHP SHNHPLRGHK AQVEDEIICS GCDLDLLGAY FKCTKSECDY FLHKSCFDLP REIRHKSHPD HPLILLYSPQ NNNSTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
Arabidopsis Description
At2g17740 [Source:UniProtKB/TrEMBL;Acc:Q6NQN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.