Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016177 | Potato | nucleus | 78.37 | 80.0 |
| PGSC0003DMT400074529 | Potato | cytosol | 78.37 | 79.67 |
| Solyc01g073810.2.1 | Tomato | nucleus | 77.55 | 76.31 |
| PGSC0003DMT400016178 | Potato | cytosol | 70.2 | 68.25 |
| PGSC0003DMT400074527 | Potato | cytosol | 67.76 | 68.03 |
| PGSC0003DMT400074525 | Potato | cytosol | 66.53 | 66.8 |
| PGSC0003DMT400074531 | Potato | nucleus | 64.49 | 60.77 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 62.86 | 59.69 |
| PGSC0003DMT400074526 | Potato | nucleus | 60.41 | 55.64 |
| PGSC0003DMT400016174 | Potato | nucleus | 40.0 | 44.34 |
| PGSC0003DMT400016183 | Potato | nucleus | 39.18 | 33.45 |
| PGSC0003DMT400016188 | Potato | nucleus | 41.22 | 27.67 |
| Bra000252.1-P | Field mustard | cytosol | 30.61 | 27.57 |
| CDY35387 | Canola | cytosol | 30.61 | 27.57 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 28.16 | 27.38 |
| CDY22552 | Canola | cytosol | 29.8 | 26.84 |
| AT2G42060.1 | Thale cress | cytosol | 28.98 | 26.49 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 42.86 | 26.45 |
| PGSC0003DMT400016180 | Potato | cytosol | 15.1 | 22.84 |
| PGSC0003DMT400093177 | Potato | cytosol | 12.24 | 22.22 |
| PGSC0003DMT400016187 | Potato | nucleus | 39.18 | 20.91 |
| PGSC0003DMT400074532 | Potato | nucleus | 33.06 | 20.61 |
| PGSC0003DMT400083994 | Potato | nucleus | 25.71 | 17.85 |
| PGSC0003DMT400048642 | Potato | cytosol | 4.08 | 16.67 |
| PGSC0003DMT400016143 | Potato | nucleus | 25.71 | 16.58 |
| PGSC0003DMT400069576 | Potato | cytosol | 23.67 | 15.68 |
| PGSC0003DMT400085165 | Potato | extracellular | 21.63 | 14.48 |
| PGSC0003DMT400027065 | Potato | nucleus | 24.9 | 13.23 |
| PGSC0003DMT400029742 | Potato | cytosol | 22.04 | 12.24 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 25.71 | 11.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074528 | EnsemblPlantsGene:PGSC0003DMG400028969 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 |
| PGSC:PGSC0003DMG400028969 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI000296C1CD | UniProt:M1CTU1 | MapMan:35.2 |
Description
CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028969]
Coordinates
chr1:+:66868739..66869655
Molecular Weight (calculated)
27463.0 Da
IEP (calculated)
6.205
GRAVY (calculated)
-0.447
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRLNGGTNE GKQHFSHQHV LKQIVNPTET LNCNACEKPN NTNKPFYGCN TCQYFLHENC FNAPRILNHS SHPSHPLTLH QIPSYTSGSY FCNACGSVGN
101: GFCYNCADCD FDIHLQCASC PSSILVDKHT HQLEIQYGYP EDSEYVCDIC SVMMNNDNWF YYCGGCDFAS HLNCAIISPE VGVFPKQLQR PNPNLNPSRN
201: SHANAAVEMI NSVNDDHDRL IAAQIRAQIE ALLRSTHDQD VLCWT
101: GFCYNCADCD FDIHLQCASC PSSILVDKHT HQLEIQYGYP EDSEYVCDIC SVMMNNDNWF YYCGGCDFAS HLNCAIISPE VGVFPKQLQR PNPNLNPSRN
201: SHANAAVEMI NSVNDDHDRL IAAQIRAQIE ALLRSTHDQD VLCWT
001: MASRPSVRHP SHNHPLRGHK AQVEDEIICS GCDLDLLGAY FKCTKSECDY FLHKSCFDLP REIRHKSHPD HPLILLYSPQ NNNSTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
Arabidopsis Description
At2g17740 [Source:UniProtKB/TrEMBL;Acc:Q6NQN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.