Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073840.1.1 | Tomato | nucleus | 85.4 | 85.4 |
| PGSC0003DMT400016174 | Potato | nucleus | 32.03 | 66.52 |
| PGSC0003DMT400016183 | Potato | nucleus | 37.04 | 59.23 |
| PGSC0003DMT400016188 | Potato | nucleus | 37.69 | 47.4 |
| PGSC0003DMT400074526 | Potato | nucleus | 25.49 | 43.98 |
| PGSC0003DMT400074525 | Potato | cytosol | 23.09 | 43.44 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 24.4 | 43.41 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 37.04 | 42.82 |
| PGSC0003DMT400074527 | Potato | cytosol | 22.44 | 42.21 |
| PGSC0003DMT400074529 | Potato | cytosol | 21.57 | 41.08 |
| PGSC0003DMT400016178 | Potato | cytosol | 22.0 | 40.08 |
| PGSC0003DMT400074531 | Potato | nucleus | 22.66 | 40.0 |
| PGSC0003DMT400074528 | Potato | nucleus | 20.91 | 39.18 |
| PGSC0003DMT400016177 | Potato | nucleus | 20.48 | 39.17 |
| AT2G42060.1 | Thale cress | cytosol | 16.34 | 27.99 |
| PGSC0003DMT400074532 | Potato | nucleus | 23.75 | 27.74 |
| CDY35387 | Canola | cytosol | 16.12 | 27.21 |
| CDY22552 | Canola | cytosol | 16.12 | 27.21 |
| Bra000252.1-P | Field mustard | cytosol | 16.12 | 27.21 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 14.81 | 26.98 |
| PGSC0003DMT400016180 | Potato | cytosol | 8.71 | 24.69 |
| PGSC0003DMT400093177 | Potato | cytosol | 6.54 | 22.22 |
| PGSC0003DMT400027065 | Potato | nucleus | 20.04 | 19.96 |
| PGSC0003DMT400029742 | Potato | cytosol | 16.99 | 17.69 |
| PGSC0003DMT400069576 | Potato | cytosol | 14.16 | 17.57 |
| PGSC0003DMT400083994 | Potato | nucleus | 13.29 | 17.28 |
| PGSC0003DMT400016143 | Potato | nucleus | 13.29 | 16.05 |
| PGSC0003DMT400048642 | Potato | cytosol | 1.96 | 15.0 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 16.56 | 14.18 |
| PGSC0003DMT400085165 | Potato | extracellular | 9.8 | 12.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016187 | EnsemblPlantsGene:PGSC0003DMG400006326 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 |
| PGSC:PGSC0003DMG400006326 | SUPFAM:SSF57889 | UniParc:UPI000296B099 | UniProt:M1A789 | MapMan:35.2 | : |
Description
DC1 domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006326]
Coordinates
chr1:+:66769466..66771016
Molecular Weight (calculated)
52815.0 Da
IEP (calculated)
6.545
GRAVY (calculated)
-0.642
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKQTCQG KQHFSHPHIL KPIVNPTETL TCNACEQPNI TSNFYVCTTC QYYLHENCLN APRFLHHASH PSHHLTLLPV PTYSNRSYTC KACGSAGNGC
101: SFSCACCDFD IRMQCALLPQ TVVLSQQHHH ELELIFESPY DDEADESTVF ICDVYHDNAD LNNWLYYCAD CDFGTHLKCA ISKSVRQQEP KQRKTEKEPI
201: KIHEINKKEE NRGVTSKVKN LKHFSHSHPL ELCKVQQSNE IICSGCEDEL CDTSANYKCT KSNCEFNLHK SCFELPRKIQ HNSHPNHPLT LYPTSPERRL
301: YFGCNACGEI PNSFVYECLE CNFSLHAKCA TSWPETATRE DHQHSLTLQY QWPFPSEDSV YISCNVCDGH CNDSLWLYYC AECKLGTHLK CVTVKKEEDS
401: SLETEKEPVH EENMTNAERL MMASIELQEH QARMNFRSNM AHQNAQFMNN LFGNPYRYY
101: SFSCACCDFD IRMQCALLPQ TVVLSQQHHH ELELIFESPY DDEADESTVF ICDVYHDNAD LNNWLYYCAD CDFGTHLKCA ISKSVRQQEP KQRKTEKEPI
201: KIHEINKKEE NRGVTSKVKN LKHFSHSHPL ELCKVQQSNE IICSGCEDEL CDTSANYKCT KSNCEFNLHK SCFELPRKIQ HNSHPNHPLT LYPTSPERRL
301: YFGCNACGEI PNSFVYECLE CNFSLHAKCA TSWPETATRE DHQHSLTLQY QWPFPSEDSV YISCNVCDGH CNDSLWLYYC AECKLGTHLK CVTVKKEEDS
401: SLETEKEPVH EENMTNAERL MMASIELQEH QARMNFRSNM AHQNAQFMNN LFGNPYRYY
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.