Factsheet for PGSC0003DMT400094028

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	87.69	88.18
PGSC0003DMT400029742	Potato	cytosol	27.99	34.01
PGSC0003DMT400016177	Potato	nucleus	12.31	27.5
PGSC0003DMT400074527	Potato	cytosol	11.94	26.23
PGSC0003DMT400074525	Potato	cytosol	11.94	26.23
PGSC0003DMT400074529	Potato	cytosol	11.75	26.14
PGSC0003DMT400027065	Potato	nucleus	22.2	25.81
PGSC0003DMT400016178	Potato	cytosol	12.13	25.79
PGSC0003DMT400016174	Potato	nucleus	10.63	25.79
PGSC0003DMT400074528	Potato	nucleus	11.75	25.71
PGSC0003DMT400074531	Potato	nucleus	12.31	25.38
PGSC0003DMT400074526	Potato	nucleus	12.13	24.44
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	11.38	23.64
PGSC0003DMT400093177	Potato	cytosol	5.6	22.22
PGSC0003DMT400016183	Potato	nucleus	11.75	21.95
PGSC0003DMT400048642	Potato	cytosol	2.43	21.67
PGSC0003DMT400016180	Potato	cytosol	5.78	19.14
PGSC0003DMT400016188	Potato	nucleus	12.87	18.9
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	12.87	17.38
PGSC0003DMT400016187	Potato	nucleus	14.18	16.56
PGSC0003DMT400074532	Potato	nucleus	11.94	16.29
PGSC0003DMT400016143	Potato	nucleus	11.01	15.53
PGSC0003DMT400083994	Potato	nucleus	10.07	15.3
PGSC0003DMT400069576	Potato	cytosol	9.7	14.05
PGSC0003DMT400085165	Potato	extracellular	8.96	13.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400094028	EnsemblPlantsGene:PGSC0003DMG400043599	EntrezGene:102581981	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871	PANTHER:PTHR13871:SF83	PFAM:PF03107	PGSC:PGSC0003DMG400043599
RefSeq:XP_006351054.1	SUPFAM:SSF57889	TMHMM:TMhelix	UniParc:UPI0002965980	UniProt:M1DT84	MapMan:35.2

Description

CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400043599]

Coordinates

chr8:+:7541702..7543312

Molecular Weight (calculated)

61507.3 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.232

Length

536 amino acids

Sequence
(BLAST)

001: MPDNKKMLSS QFDDNNLEFS YLQGLSILLP TIVLVYCLLK FILQLLIHHP QHMSQPKKRE IEIVTNEKSD ASDQAEDQLD EAKGQQAVLY RFRQRHKNIQ
101: TQITSCAKLI AKEEESCVSK APPRLRDGDL VHFSHRHPLL RFHLKGTEVI RCNMCTIIIS RVAYGCDCCR YFLHEVCSNI PKRIRHDFHP MHSLTLLPIP
201: SIALWHSKVE SEFCCVACGY DNSLFSFYYH CDLCKFDLHL ECASVTTKLI HKVKYPLDLF TSFPLKSEGA ALLCCICNQV MNRQSGWLFY NREFDYICHF
301: ECAAEEELAV IGDQSFLSEV QKSLLLQKSC SGQQQKLEKL GEVIHFSHRH PLTAIKQTNK ASIMNCCICS NQALSGYICQ LCNYFIDETC FPLPRRIQHH
401: FHPNHPLILA SYNDPPKSKC RACGHEEGAK YRCSTCKFSL HRCCAGAPMT FTLGTNKKVS YKLLYSYPCD GEMAVIKCSG CSSELNSKES FMYYNFDLDE
501: VLHVQCALNR ETDSYDTMLV LASERLKSIK IEEDHS

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.