Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016174 | Potato | nucleus | 57.49 | 74.66 |
| PGSC0003DMT400016188 | Potato | nucleus | 63.07 | 49.59 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 39.72 | 44.19 |
| PGSC0003DMT400074526 | Potato | nucleus | 40.77 | 43.98 |
| PGSC0003DMT400074525 | Potato | cytosol | 37.28 | 43.85 |
| PGSC0003DMT400074527 | Potato | cytosol | 36.93 | 43.44 |
| PGSC0003DMT400074529 | Potato | cytosol | 36.24 | 43.15 |
| PGSC0003DMT400016178 | Potato | cytosol | 36.59 | 41.67 |
| PGSC0003DMT400074531 | Potato | nucleus | 37.28 | 41.15 |
| PGSC0003DMT400016177 | Potato | nucleus | 33.8 | 40.42 |
| PGSC0003DMT400074528 | Potato | nucleus | 33.45 | 39.18 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 52.96 | 38.29 |
| PGSC0003DMT400016187 | Potato | nucleus | 59.23 | 37.04 |
| AT2G42060.1 | Thale cress | cytosol | 27.53 | 29.48 |
| Bra000252.1-P | Field mustard | cytosol | 27.53 | 29.04 |
| CDY35387 | Canola | cytosol | 27.53 | 29.04 |
| CDY22552 | Canola | cytosol | 27.18 | 28.68 |
| PGSC0003DMT400074532 | Potato | nucleus | 38.68 | 28.24 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 24.39 | 27.78 |
| PGSC0003DMT400093177 | Potato | cytosol | 11.15 | 23.7 |
| PGSC0003DMT400016180 | Potato | cytosol | 12.89 | 22.84 |
| PGSC0003DMT400083994 | Potato | nucleus | 23.0 | 18.7 |
| PGSC0003DMT400069576 | Potato | cytosol | 23.69 | 18.38 |
| PGSC0003DMT400016143 | Potato | nucleus | 22.65 | 17.11 |
| PGSC0003DMT400048642 | Potato | cytosol | 3.48 | 16.67 |
| PGSC0003DMT400029742 | Potato | cytosol | 23.0 | 14.97 |
| PGSC0003DMT400027065 | Potato | nucleus | 21.25 | 13.23 |
| PGSC0003DMT400085165 | Potato | extracellular | 15.68 | 12.3 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 21.95 | 11.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016183 | EnsemblPlantsGene:PGSC0003DMG400006325 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:DC1 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | ncoils:Coil | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 |
| PGSC:PGSC0003DMG400006325 | SEG:seg | SMART:SM00249 | SUPFAM:SSF57889 | SUPFAM:SSF57903 | UniParc:UPI0002960C93 |
| UniProt:M1A788 | MapMan:35.2 | : | : | : | : |
Description
DC1 domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006325]
Coordinates
chr1:+:66774090..66774953
Molecular Weight (calculated)
32594.1 Da
IEP (calculated)
5.471
GRAVY (calculated)
-0.611
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKQTCQG KQHFSHPHIL KPIVNPTETL TCNVCEQPNI TSNFYGCNTC QYYLHENCLN APRFLDHPSH SSHHVTLLPV PTYSNRSFTC KACGSAGTGC
101: SFSCACCDFD IHMQCALLPQ TVVLPQQHHH ELELIFESPY DDEADENTVF VCDVCHDNAD LNNWLYYCAD CDFGTHLECA ISKSVRQQEP KKLPVNKPRA
201: NRVIIRKTEE ESIKIQETNQ KEEEEDEEED GGSMNEVKKM KHFSHSHAVE LSEVQETEEI LCSGCEDKLC GTAYKCTKRN CEFTLHI
101: SFSCACCDFD IHMQCALLPQ TVVLPQQHHH ELELIFESPY DDEADENTVF VCDVCHDNAD LNNWLYYCAD CDFGTHLECA ISKSVRQQEP KKLPVNKPRA
201: NRVIIRKTEE ESIKIQETNQ KEEEEDEEED GGSMNEVKKM KHFSHSHAVE LSEVQETEEI LCSGCEDKLC GTAYKCTKRN CEFTLHI
001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.