Factsheet for VIT_08s0007g06620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22552	Canola	cytosol	45.63	42.28
AT2G42060.1	Thale cress	cytosol	44.05	41.42
Bra000252.1-P	Field mustard	cytosol	44.44	41.18
CDY35387	Canola	cytosol	44.44	41.18
VIT_08s0007g05730.t01	Wine grape	cytosol	17.06	33.59
PGSC0003DMT400016174	Potato	nucleus	26.98	30.77
PGSC0003DMT400074528	Potato	nucleus	27.38	28.16
PGSC0003DMT400016177	Potato	nucleus	26.19	27.5
PGSC0003DMT400074529	Potato	cytosol	26.19	27.39
PGSC0003DMT400074525	Potato	cytosol	25.79	26.64
PGSC0003DMT400074527	Potato	cytosol	25.79	26.64
Solyc01g073810.2.1	Tomato	nucleus	26.19	26.51
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	26.59	25.87
Solyc01g073800.2.1	Tomato	nucleus	25.4	25.81
PGSC0003DMT400016178	Potato	cytosol	25.79	25.79
PGSC0003DMT400074526	Potato	nucleus	26.98	25.56
PGSC0003DMT400016183	Potato	nucleus	27.78	24.39
PGSC0003DMT400074531	Potato	nucleus	25.0	24.23
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	24.21	23.64
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	28.97	23.55
VIT_08s0007g06630.t01	Wine grape	cytosol	25.4	23.36
PGSC0003DMT400016188	Potato	nucleus	29.37	20.27
VIT_06s0004g01230.t01	Wine grape	cytosol	25.0	19.75
Solyc01g073780.2.1	Tomato	nucleus	30.16	19.14
PGSC0003DMT400074532	Potato	nucleus	28.97	18.58
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	28.57	18.14
Solyc01g073840.1.1	Tomato	nucleus	27.78	15.25
PGSC0003DMT400016187	Potato	nucleus	26.98	14.81

Protein Annotations

EntrezGene:100258837	wikigene:100258837	MapMan:35.2	ProteinID:CCB55239	ProteinID:CCB55239.1	InterPro:DC1
UniProt:F6HLI3	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869
EntrezGene:LOC100258837	wikigene:LOC100258837	PFAM:PF03107	PANTHER:PTHR13871	PANTHER:PTHR13871:SF59	SUPFAM:SSF57889
UniParc:UPI0001983E57	ArrayExpress:VIT_08s0007g06620	EnsemblPlantsGene:VIT_08s0007g06620	EnsemblPlants:VIT_08s0007g06620.t01	RefSeq:XP_002275658	RefSeq:XP_002275658.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20319660..20320549

Molecular Weight (calculated)

27523.6 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.171

Length

252 amino acids

Sequence
(BLAST)

001: MEYKHFNHEH NLAIFELQAG NGIHCSGCRT LCSNSAYACW KCDFFLHLEC GNANRAMEHP SHELHHLTLV PYPTYSAGSF VCNACGAPGS SFSYCCSLCE
101: FDLHIRCALL PAIISHRAHP HELSLTYGLG PQAKVSSPPN ACDICHKLVD NKFWTYSCGP CKFQLHTSCA TPEMVPISYQ ADGVSGNAAV EAGPGFYKEE
201: NGSGSSQNGS KPAEVEDPVL ATQLELMRLQ QELELSNQLA KMMASYNLSS LV

Best Arabidopsis Sequence Match ( AT2G42060.1 )
(BLAST)

001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV

Arabidopsis Description

At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.