Factsheet for Bra000252.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35387	Canola	cytosol	99.63	99.63
AT2G42060.1	Thale cress	cytosol	79.41	80.6
VIT_08s0007g06620.t01	Wine grape	cytosol	41.18	44.44
PGSC0003DMT400016174	Potato	nucleus	27.57	33.94
PGSC0003DMT400074529	Potato	cytosol	28.31	31.95
PGSC0003DMT400074528	Potato	nucleus	27.57	30.61
PGSC0003DMT400016178	Potato	cytosol	28.31	30.56
PGSC0003DMT400016177	Potato	nucleus	26.84	30.42
PGSC0003DMT400074527	Potato	cytosol	26.47	29.51
PGSC0003DMT400074525	Potato	cytosol	26.47	29.51
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	27.94	29.34
Solyc01g073800.2.1	Tomato	nucleus	26.1	28.63
PGSC0003DMT400074526	Potato	nucleus	27.94	28.57
Solyc01g073810.2.1	Tomato	nucleus	26.1	28.51
Bra004826.1-P	Field mustard	nucleus	25.0	28.1
PGSC0003DMT400074531	Potato	nucleus	26.84	28.08
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	26.47	27.91
PGSC0003DMT400016183	Potato	nucleus	29.04	27.53
Bra000352.1-P	Field mustard	nucleus	24.26	27.27
Bra028465.1-P	Field mustard	cytosol	23.16	27.04
Bra037654.1-P	Field mustard	nucleus	24.26	26.72
Bra037653.1-P	Field mustard	mitochondrion, nucleus	25.0	26.67
Bra037655.1-P	Field mustard	nucleus	23.9	26.64
Bra040653.1-P	Field mustard	mitochondrion	22.43	26.29
Bra004828.1-P	Field mustard	nucleus	23.16	24.9
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	28.31	24.84
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	29.41	20.15
PGSC0003DMT400074532	Potato	nucleus	29.04	20.1
PGSC0003DMT400016188	Potato	nucleus	26.84	20.0
Solyc01g073780.2.1	Tomato	nucleus	27.57	18.89
Solyc01g073840.1.1	Tomato	nucleus	27.57	16.34
PGSC0003DMT400016187	Potato	nucleus	27.21	16.12
Bra037652.1-P	Field mustard	cytosol, plastid	21.69	14.5
Bra012008.1-P	Field mustard	nucleus	4.04	2.39

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra000252	EnsemblPlants:Bra000252.1	EnsemblPlants:Bra000252.1-P	ncoils:Coil	InterPro:DC1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0035556	InterPro:IPR002219	UniProt:M4C7S4	InterPro:PE/DAG-bd	PFAM:PF03107
PFscan:PS50081	PANTHER:PTHR13871	PANTHER:PTHR13871:SF59	SUPFAM:SSF57889	UniParc:UPI00025403B4	SEG:seg

Description

AT2G42060 (E=5e-128) | CHP-rich zinc finger protein, putative

Coordinates

chrA03:+:10149114..10149932

Molecular Weight (calculated)

29531.9 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.139

Length

272 amino acids

Sequence
(BLAST)

001: MEYKHFSHPH TLKLQQLQTT KPSDPSPICS GCESAISESA TAYICSTCDF KLHEQCGNAV RGMNHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAQLPQ VLVHDSHPLH SLLLVYNSAP PAMPFTQFGY VNQLVCNLCN VGMDGRFWSY NCYACNYHVH ASCAVNKPKP VAAASAVEKC
201: GTTSDEGGAV SAESVPAQCL ETEQTQQPDA TTEQVEDPAL RQQLELQRLQ LELDMSSALA NMIGSFNLSS FV

Best Arabidopsis Sequence Match ( AT2G42060.1 )
(BLAST)

001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV

Arabidopsis Description

At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.