Factsheet for Bra040653.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22774	Canola	mitochondrion	71.12	95.38
AT2G44380.1	Thale cress	mitochondrion, nucleus	75.86	71.26
AT2G44390.1	Thale cress	mitochondrion	62.5	69.38
Bra037653.1-P	Field mustard	mitochondrion, nucleus	74.14	67.45
Bra000352.1-P	Field mustard	nucleus	63.36	60.74
Bra037654.1-P	Field mustard	nucleus	63.79	59.92
Bra004828.1-P	Field mustard	nucleus	64.22	58.89
Bra028465.1-P	Field mustard	cytosol	57.33	57.08
Bra004826.1-P	Field mustard	nucleus	59.05	56.61
Bra037655.1-P	Field mustard	nucleus	58.19	55.33
Solyc01g073850.1.1	Tomato	cytosol	16.81	35.14
Solyc01g073860.2.1	Tomato	cytosol	34.48	33.9
PGSC0003DMT400016180	Potato	cytosol	19.4	27.78
Bra000252.1-P	Field mustard	cytosol	26.29	22.43
Bra037652.1-P	Field mustard	cytosol, plastid	26.72	15.23
Bra012008.1-P	Field mustard	nucleus	4.31	2.17

Protein Annotations

EnsemblPlants:Bra040653.1	EnsemblPlants:Bra040653.1-P	EnsemblPlantsGene:Bra040653	InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60
PFAM:PF03107	SEG:seg	SUPFAM:SSF57889	UniParc:UPI000253E6EE	UniProt:M4FHS5	MapMan:35.2

Description

AT2G44380 (E=2e-101) | DC1 domain-containing protein

Coordinates

chrScaffold000228:+:63375..64073

Molecular Weight (calculated)

26640.1 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.672

Length

232 amino acids

Sequence
(BLAST)

001: MASKKPVNRP SVRHPSHNHP LRVFKAQNED EIICSGCELD LTGQAFKCTK DCDYFLHKSC FDLPCEINHK SHPDHPITLF YSPPYDHQSY ECDACGEYGS
101: GFTYNCSVCK YDVHVGCAFI PETVDREDHK HPLTLLYKIP CEDGKIYVCD VCEEEVSENL WTYYCKECDY GTHVHSCALD EDYEEEEEEN RESSSAASRM
201: KSLMKAQDEM AAMKLESRMK KAANNAIIYS IR

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.