Factsheet for Bra037652.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71678	Canola	plastid	29.98	90.37
AT2G44400.1	Thale cress	mitochondrion, nucleus, peroxisome, vacuole	29.48	82.19
CDY30470	Canola	cytosol, plastid	70.27	70.1
Solyc01g073890.2.1	Tomato	cytosol	26.29	28.08
PGSC0003DMT400016143	Potato	nucleus	26.04	27.89
Bra037654.1-P	Field mustard	nucleus	16.71	27.53
Bra004826.1-P	Field mustard	nucleus	15.97	26.86
Bra040653.1-P	Field mustard	mitochondrion	15.23	26.72
Bra028465.1-P	Field mustard	cytosol	14.5	25.32
Bra000352.1-P	Field mustard	nucleus	14.99	25.21
Bra037653.1-P	Field mustard	mitochondrion, nucleus	15.72	25.1
Bra037655.1-P	Field mustard	nucleus	14.99	25.0
VIT_08s0007g06630.t01	Wine grape	cytosol	16.71	24.82
Bra004828.1-P	Field mustard	nucleus	14.0	22.53
Bra000252.1-P	Field mustard	cytosol	14.5	21.69
Bra012008.1-P	Field mustard	nucleus	6.14	5.42

Protein Annotations

EnsemblPlants:Bra037652.1	EnsemblPlants:Bra037652.1-P	EnsemblPlantsGene:Bra037652	InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF86
PFAM:PF03107	PFscan:PS51257	SEG:seg	SUPFAM:SSF57889	UniParc:UPI0002544072	UniProt:M4F989
MapMan:35.2	:	:	:	:	:

Description

AT2G44400 (E=5e-067) | DC1 domain-containing protein

Coordinates

chrA04:+:18305088..18306311

Molecular Weight (calculated)

42639.3 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.148

Length

407 amino acids

Sequence
(BLAST)

001: MGRPKPEDSI RHFSHPHPLF NSSLNPQANS SSSSCVVCKL KLLNLPSYTC KPCNFHIHLK CSELPQKIRH PFDKNHLLSL ISSPKYQEGT FRCDACGKNG
101: DGFAYHCGDC GIDLHTVCAN MPSRVTHQSH PHHQLYLTFS MPSPGGSGSG SRSAAAASFR CSVCQGLGSN SWLYSCKECG GFDAHLLCAR KKLPSPTNMV
201: QHGPNRPMQP HSIATTPFVN VPSPVFNNPY PLGTPTMSPI IRPMINEMIN NLVTNTPQSP SQVSQLLDLL GPFGLGGGSG SSSSSGIGFD PSVFSSVGPP
301: FGLGGGSGSS SSFGYLGFDP SVFQSVNQPF GLGGGSGSSS SSGYLGFDPS GFSFVGQPFG LGGGSGSSSS FGYLGFDPSV FPSVDPSVFA GFDPSLLSTL
401: FSGLGFL

Best Arabidopsis Sequence Match ( AT2G44400.1 )
(BLAST)

001: MICKLKLLSL PSYSSKPCNF YIHLKCSELP QKIRHPFDRN HLLSLISSPK YQEGRFRCNA CGKDGDRLAY HCGDCGIDLH TVCANMPSRV THQSHPHHQL
101: SLTFSMPPGG PGSAAASSFQ CCVCRGLGSN SWLYSCGECS GFDAHL

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:O64874]
SUBAcon: [mitochondrion,peroxisome,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.