Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- peroxisome 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71678 | Canola | plastid | 54.11 | 58.52 |
| CDY30470 | Canola | cytosol, plastid | 84.93 | 30.39 |
| Bra037652.1-P | Field mustard | cytosol, plastid | 82.19 | 29.48 |
| VIT_08s0007g06630.t01 | Wine grape | cytosol | 36.99 | 19.71 |
| AT5G40590.1 | Thale cress | nucleus | 30.82 | 19.23 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 32.19 | 18.95 |
| Solyc01g073890.2.1 | Tomato | cytosol | 48.63 | 18.64 |
| PGSC0003DMT400016143 | Potato | nucleus | 47.95 | 18.42 |
| AT2G44370.1 | Thale cress | mitochondrion | 31.51 | 18.4 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 30.82 | 18.22 |
| AT2G28270.1 | Thale cress | nucleus | 29.45 | 17.34 |
| AT2G44390.1 | Thale cress | mitochondrion | 23.29 | 16.27 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 26.71 | 15.6 |
| AT2G42060.1 | Thale cress | cytosol | 28.08 | 15.3 |
| AT2G27660.1 | Thale cress | plastid | 41.1 | 8.36 |
Protein Annotations
| ArrayExpress:AT2G44400 | EnsemblPlants:AT2G44400.1 | EnsemblPlantsGene:AT2G44400 | EntrezGene:819047 | InterPro:DC1 | PANTHER:PTHR13871 |
| PANTHER:PTHR13871:SF86 | PFAM:PF03107 | ProteinID:AAC16086.1 | ProteinID:AEC10416.1 | RefSeq:AT2G44400 | RefSeq:AT2G44400-TAIR-G |
| RefSeq:NP_181968.1 | SEG:seg | SUPFAM:SSF57889 | TAIR:AT2G44400 | TAIR:AT2G44400.1 | UniParc:UPI00000A78E7 |
| UniProt:O64874 | MapMan:35.2 | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:O64874]
Coordinates
chr2:+:18326954..18327888
Molecular Weight (calculated)
16074.3 Da
IEP (calculated)
8.262
GRAVY (calculated)
-0.269
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MICKLKLLSL PSYSSKPCNF YIHLKCSELP QKIRHPFDRN HLLSLISSPK YQEGRFRCNA CGKDGDRLAY HCGDCGIDLH TVCANMPSRV THQSHPHHQL
101: SLTFSMPPGG PGSAAASSFQ CCVCRGLGSN SWLYSCGECS GFDAHL
101: SLTFSMPPGG PGSAAASSFQ CCVCRGLGSN SWLYSCGECS GFDAHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.