Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004828.1-P | Field mustard | nucleus | 78.4 | 77.47 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 53.2 | 72.68 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 70.8 | 71.66 |
| CDX79762 | Canola | nucleus, plastid | 55.2 | 67.32 |
| AT2G44390.1 | Thale cress | mitochondrion | 56.0 | 66.99 |
| AT2G28270.1 | Thale cress | nucleus | 57.6 | 58.06 |
| AT2G44370.1 | Thale cress | mitochondrion | 52.8 | 52.8 |
| AT5G40590.1 | Thale cress | nucleus | 49.2 | 52.56 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 49.6 | 50.0 |
| Solyc01g073850.1.1 | Tomato | cytosol | 15.2 | 34.23 |
| Solyc01g073860.2.1 | Tomato | cytosol | 31.2 | 33.05 |
| PGSC0003DMT400016180 | Potato | cytosol | 19.2 | 29.63 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 15.6 | 26.71 |
| AT2G42060.1 | Thale cress | cytosol | 24.4 | 22.76 |
| AT2G27660.1 | Thale cress | plastid | 21.2 | 7.38 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834372 | ProteinID:AED94976.1 | ArrayExpress:AT5G43520 | EnsemblPlantsGene:AT5G43520 | RefSeq:AT5G43520 |
| TAIR:AT5G43520 | RefSeq:AT5G43520-TAIR-G | EnsemblPlants:AT5G43520.1 | TAIR:AT5G43520.1 | ProteinID:BAB11615.1 | ncoils:Coil |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 | RefSeq:NP_199165.1 |
| PFAM:PF03107 | PO:PO:0009005 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | UniProt:Q9FIY8 | SUPFAM:SSF57889 |
| UniParc:UPI00000A599F | SEG:seg | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FIY8]
Coordinates
chr5:-:17485231..17486309
Molecular Weight (calculated)
28653.9 Da
IEP (calculated)
4.759
GRAVY (calculated)
-0.874
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPKAKP VNRQSVRHPS HNHPLRVFKA KEEDETACSG CELELTGQAF KCIKSECDYF LHKSCFDLPS ETNNKSHQDH PLTLLHSPPD DRSVYTCDAC
101: DQYGSGFSYH CSNCNYSLHV GCAFIPETVD REDHEHPLTL LYCTPCKGRE DTYFTCSACD ETISEDLWMY YCKDCDYGTH LHSCAAYEDQ GKEEEDEDEE
201: GEASSPASRI KSLMKAQDEM AAMQLEARIE NDARNAALDL WDEPKRRYYW
101: DQYGSGFSYH CSNCNYSLHV GCAFIPETVD REDHEHPLTL LYCTPCKGRE DTYFTCSACD ETISEDLWMY YCKDCDYGTH LHSCAAYEDQ GKEEEDEDEE
201: GEASSPASRI KSLMKAQDEM AAMQLEARIE NDARNAALDL WDEPKRRYYW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.