Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028465.1-P | Field mustard | cytosol | 83.33 | 83.69 |
| CDY67171 | Canola | cytosol | 83.33 | 83.69 |
| CDX67465 | Canola | cytosol | 77.78 | 78.11 |
| AT2G44370.1 | Thale cress | mitochondrion | 70.51 | 66.0 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 63.68 | 60.08 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 55.56 | 52.63 |
| AT2G28270.1 | Thale cress | nucleus | 54.7 | 51.61 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 52.56 | 49.2 |
| AT2G44390.1 | Thale cress | mitochondrion | 42.31 | 47.37 |
| Solyc01g073850.1.1 | Tomato | cytosol | 16.67 | 35.14 |
| Solyc01g073860.2.1 | Tomato | cytosol | 33.33 | 33.05 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 19.23 | 30.82 |
| PGSC0003DMT400016180 | Potato | cytosol | 19.66 | 28.4 |
| AT2G42060.1 | Thale cress | cytosol | 27.35 | 23.88 |
| AT2G27660.1 | Thale cress | plastid | 23.5 | 7.66 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834057 | ProteinID:AED94570.1 | ArrayExpress:AT5G40590 | EnsemblPlantsGene:AT5G40590 | RefSeq:AT5G40590 |
| TAIR:AT5G40590 | RefSeq:AT5G40590-TAIR-G | EnsemblPlants:AT5G40590.1 | TAIR:AT5G40590.1 | ProteinID:BAB08529.1 | EMBL:BT010703 |
| EMBL:BT010977 | ncoils:Coil | InterPro:DC1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0098869 | RefSeq:NP_198875.1 | PFAM:PF03107 | PO:PO:0009005 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| UniProt:Q9FM39 | SUPFAM:SSF57889 | UniParc:UPI00000A5A03 | SEG:seg | : | : |
Description
At5g40590 [Source:UniProtKB/TrEMBL;Acc:Q9FM39]
Coordinates
chr5:-:16251318..16252434
Molecular Weight (calculated)
26378.2 Da
IEP (calculated)
6.724
GRAVY (calculated)
-0.625
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRQSVRHP SHNHPLRGHK CEAKDEIICS GCDLDLVGAA FKCTKSSDCD YFLHKSCFEL PRETNHKSHQ PHTLTLIYSP KSTYTCNACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.