Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G44370.1 | Thale cress | mitochondrion | 72.98 | 72.4 |
| CDY30467 | Canola | nucleus | 66.94 | 68.03 |
| CDY23430 | Canola | nucleus | 64.92 | 64.92 |
| Bra004826.1-P | Field mustard | nucleus | 62.9 | 64.46 |
| AT5G40590.1 | Thale cress | nucleus | 60.08 | 63.68 |
| CDY17855 | Canola | nucleus | 61.69 | 63.22 |
| Bra037655.1-P | Field mustard | nucleus | 60.89 | 61.89 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 52.42 | 52.63 |
| AT2G28270.1 | Thale cress | nucleus | 50.4 | 50.4 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 50.0 | 49.6 |
| AT2G44390.1 | Thale cress | mitochondrion | 40.32 | 47.85 |
| Solyc01g073850.1.1 | Tomato | cytosol | 14.92 | 33.33 |
| Solyc01g073860.2.1 | Tomato | cytosol | 31.05 | 32.63 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 18.95 | 32.19 |
| PGSC0003DMT400016180 | Potato | cytosol | 16.53 | 25.31 |
| AT2G42060.1 | Thale cress | cytosol | 25.4 | 23.51 |
| AT2G27660.1 | Thale cress | plastid | 24.19 | 8.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816283 | UniProt:A0A178VXK4 | ProteinID:AEC06677.1 | EMBL:AK175184 | EMBL:AK175399 |
| EMBL:AK176583 | EMBL:AK176759 | ArrayExpress:AT2G17740 | EnsemblPlantsGene:AT2G17740 | RefSeq:AT2G17740 | TAIR:AT2G17740 |
| RefSeq:AT2G17740-TAIR-G | EnsemblPlants:AT2G17740.1 | TAIR:AT2G17740.1 | Unigene:At.40105 | EMBL:BT010413 | InterPro:DC1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009561 |
| GO:GO:0009987 | GO:GO:0055046 | GO:GO:0098869 | RefSeq:NP_179365.1 | ProteinID:OAP11087.1 | PFAM:PF03107 |
| PO:PO:0000013 | PO:PO:0000293 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| UniProt:Q6NQN8 | SUPFAM:SSF57889 | UniParc:UPI0000162356 | SEG:seg | : | : |
Description
At2g17740 [Source:UniProtKB/TrEMBL;Acc:Q6NQN8]
Coordinates
chr2:-:7706896..7707954
Molecular Weight (calculated)
27955.3 Da
IEP (calculated)
7.365
GRAVY (calculated)
-0.631
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRPSVRHP SHNHPLRGHK AQVEDEIICS GCDLDLLGAY FKCTKSECDY FLHKSCFDLP REIRHKSHPD HPLILLYSPQ NNNSTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.