Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037654.1-P | Field mustard | nucleus | 70.97 | 71.26 |
| CDY30468 | Canola | nucleus | 70.97 | 71.26 |
| CDY23431 | Canola | nucleus | 64.92 | 65.18 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 62.9 | 63.16 |
| AT2G44390.1 | Thale cress | mitochondrion | 52.42 | 62.2 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 58.06 | 57.6 |
| AT5G40590.1 | Thale cress | nucleus | 51.61 | 54.7 |
| AT2G44370.1 | Thale cress | mitochondrion | 51.21 | 50.8 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 50.4 | 50.4 |
| Solyc01g073850.1.1 | Tomato | cytosol | 16.53 | 36.94 |
| Solyc01g073860.2.1 | Tomato | cytosol | 33.87 | 35.59 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 17.34 | 29.45 |
| PGSC0003DMT400016180 | Potato | cytosol | 17.74 | 27.16 |
| AT2G42060.1 | Thale cress | cytosol | 25.81 | 23.88 |
| AT2G27660.1 | Thale cress | plastid | 22.58 | 7.8 |
Protein Annotations
| MapMan:35.2 | EntrezGene:817373 | UniProt:A0A178VWF4 | ProteinID:AAD29826.1 | ProteinID:AEC08098.1 | ArrayExpress:AT2G28270 |
| EnsemblPlantsGene:AT2G28270 | RefSeq:AT2G28270 | TAIR:AT2G28270 | RefSeq:AT2G28270-TAIR-G | EnsemblPlants:AT2G28270.1 | TAIR:AT2G28270.1 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 | RefSeq:NP_180394.1 |
| ProteinID:OAP09363.1 | PFAM:PF03107 | PO:PO:0009005 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | UniProt:Q9SL28 |
| SUPFAM:SSF57889 | UniParc:UPI00000AA957 | SEG:seg | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SL28]
Coordinates
chr2:+:12053542..12054538
Molecular Weight (calculated)
28017.6 Da
IEP (calculated)
6.114
GRAVY (calculated)
-0.671
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGKTNRPS VRHPSHNHPL RVFNSKEEDE IICSGCEHDL IGQAFKCTKS ECDYFLHKSC FDLPGEIHHK SHTNHPLTLL HSPPNGLSTY TCDACGEYGS
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.