Factsheet for Bra037654.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30468	Canola	nucleus	100.0	100.0
AT2G28270.1	Thale cress	nucleus	71.26	70.97
Bra037653.1-P	Field mustard	mitochondrion, nucleus	65.99	63.92
Bra040653.1-P	Field mustard	mitochondrion	59.92	63.79
Bra000352.1-P	Field mustard	nucleus	55.87	57.02
Bra004828.1-P	Field mustard	nucleus	57.09	55.73
Bra028465.1-P	Field mustard	cytosol	49.39	52.36
Bra004826.1-P	Field mustard	nucleus	51.01	52.07
Bra037655.1-P	Field mustard	nucleus	49.8	50.41
Solyc01g073850.1.1	Tomato	cytosol	16.19	36.04
Solyc01g073860.2.1	Tomato	cytosol	34.41	36.02
PGSC0003DMT400016180	Potato	cytosol	18.62	28.4
Bra000252.1-P	Field mustard	cytosol	26.72	24.26
Bra037652.1-P	Field mustard	cytosol, plastid	27.53	16.71
Bra012008.1-P	Field mustard	nucleus	4.05	2.17

Protein Annotations

EnsemblPlants:Bra037654.1	EnsemblPlants:Bra037654.1-P	EnsemblPlantsGene:Bra037654	InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60
PFAM:PF03107	SUPFAM:SSF57889	UniParc:UPI0002544070	UniProt:M4F991	MapMan:35.2	:

Description

AT2G28270 (E=1e-112) | DC1 domain-containing protein

Coordinates

chrA04:-:18302018..18302761

Molecular Weight (calculated)

27907.6 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.651

Length

247 amino acids

Sequence
(BLAST)

001: MGSGKTRANP TNRPTVRHPS HDHPLRVFKS QEGDEIICSG CELELIGQAY KCTKSECNYF LHKSCFDLPG ETLHKSHPNH PLTLVHSPPY DQSIFSCDAC
101: GEHGSGFTYH CSKCQYDVHV GCAFVPVTVQ REDHEHPLTL LYNTPCKGRE DGVTFICDVC EEDMQEHLWV YYCKECDYGT HVRSCATYED TAPKKGEEKG
201: ETSSAASEVK SEMDAKMEMA MMQVQLDAID AAGSYVGSWE PRRKYYW

Best Arabidopsis Sequence Match ( AT2G28270.1 )
(BLAST)

001: MGSGKTNRPS VRHPSHNHPL RVFNSKEEDE IICSGCEHDL IGQAFKCTKS ECDYFLHKSC FDLPGEIHHK SHTNHPLTLL HSPPNGLSTY TCDACGEYGS
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SL28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.