Factsheet for Bra028465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67171	Canola	cytosol	98.28	98.28
CDX67465	Canola	cytosol	88.84	88.84
AT5G40590.1	Thale cress	nucleus	83.69	83.33
Bra004826.1-P	Field mustard	nucleus	63.95	61.57
Bra037655.1-P	Field mustard	nucleus	63.09	60.25
Bra040653.1-P	Field mustard	mitochondrion	57.08	57.33
Bra037653.1-P	Field mustard	mitochondrion, nucleus	57.94	52.94
Bra000352.1-P	Field mustard	nucleus	53.65	51.65
Bra037654.1-P	Field mustard	nucleus	52.36	49.39
Bra004828.1-P	Field mustard	nucleus	53.22	49.01
Solyc01g073850.1.1	Tomato	cytosol	17.17	36.04
Solyc01g073860.2.1	Tomato	cytosol	31.76	31.36
PGSC0003DMT400016180	Potato	cytosol	19.31	27.78
Bra000252.1-P	Field mustard	cytosol	27.04	23.16
Bra037652.1-P	Field mustard	cytosol, plastid	25.32	14.5
Bra012008.1-P	Field mustard	nucleus	3.86	1.95

Protein Annotations

EnsemblPlants:Bra028465.1	EnsemblPlants:Bra028465.1-P	EnsemblPlantsGene:Bra028465	InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871
PANTHER:PTHR13871:SF60	PFAM:PF03107	SEG:seg	SUPFAM:SSF57889	UniParc:UPI000254331D	UniProt:M4EI50
MapMan:35.2	:	:	:	:	:

Description

AT5G40590 (E=1e-107) | DC1 domain-containing protein

Coordinates

chrA02:-:502990..503691

Molecular Weight (calculated)

26181.9 Da

IEP (calculated)

6.438

GRAVY (calculated)

-0.490

Length

233 amino acids

Sequence
(BLAST)

001: MSSRQSVRHP SHNHPLRSHK CEAKDEIICS GCDLDLIGAA FKCTKSSDCD YFLHKSCFSL PRETNHKSHQ PHCLNLLYSP KSMYTCHACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHAHPLTLL YSSPYTEPGL VFTCDVCKET VPDNLWAYYC MECDYGTHLH SCAKEEEEAK KGEGEGSKSS ANQELAAMLE
201: AQREMENMQI EIHLAMQSAL FAKKANKAAL SYI

Best Arabidopsis Sequence Match ( AT5G40590.1 )
(BLAST)

001: MSSRQSVRHP SHNHPLRGHK CEAKDEIICS GCDLDLVGAA FKCTKSSDCD YFLHKSCFEL PRETNHKSHQ PHTLTLIYSP KSTYTCNACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI

Arabidopsis Description

At5g40590 [Source:UniProtKB/TrEMBL;Acc:Q9FM39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.