CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037655.1-P	Field mustard	nucleus	88.52	88.52
CDY23430	Canola	nucleus	86.07	84.68
AT2G44370.1	Thale cress	mitochondrion	84.84	82.8
CDY17855	Canola	nucleus	69.26	69.83
CDY67171	Canola	cytosol	65.57	68.67
AT2G17740.1	Thale cress	cytosol, mitochondrion, nucleus	68.03	66.94
CDX67465	Canola	cytosol	60.66	63.52
CDY22774	Canola	mitochondrion	36.89	52.02
CDX83428	Canola	nucleus	50.82	51.45
CDY23431	Canola	nucleus	50.82	50.2
CDX95602	Canola	nucleus	49.59	50.0
CDY30468	Canola	nucleus	50.0	49.39
CDY30469	Canola	mitochondrion, nucleus	37.3	46.67
CDY71677	Canola	mitochondrion, nucleus	36.07	46.56
CDY23432	Canola	mitochondrion, nucleus	36.07	46.56
CDY17853	Canola	mitochondrion, nucleus, plastid	30.74	40.98
CDX79762	Canola	nucleus, plastid	32.38	38.54
Solyc01g073850.1.1	Tomato	cytosol	15.98	35.14
Solyc01g073860.2.1	Tomato	cytosol	31.97	33.05
CDY71678	Canola	plastid	18.03	32.59
CDY42552	Canola	mitochondrion	27.46	29.52
PGSC0003DMT400016180	Potato	cytosol	18.44	27.78
CDY22552	Canola	cytosol	27.87	25.0
CDY35387	Canola	cytosol	27.46	24.63
CDY30470	Canola	cytosol, plastid	24.59	14.71
CDY04505	Canola	plastid	22.95	8.41
CDX71437	Canola	plastid	22.13	8.16

Protein Annotations

EnsemblPlants:CDY30467	EnsemblPlantsGene:GSBRNA2T00045172001	GO:A0A078GZ21	InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871
PANTHER:PTHR13871:SF60	PFAM:PF03107	ProteinID:CDY30467	ProteinID:CDY30467.1	SEG:seg	SUPFAM:SSF57889
UniParc:UPI0001890C47	UniProt:A0A078GZ21	MapMan:35.2	:	:	:

Description

BnaA04g25680DBnaA04g25680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ21]

Coordinates

chrLK032253:-:370547..371281

Molecular Weight (calculated)

27216.4 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.499

Length

244 amino acids

Sequence
(BLAST)

001: MASRKPSVRH PSHNHPLRGH KALAEEETIC SGCDLDLIGA AFKCTKSECD YFLHKSCVDL PRETRHKSHP DHPLTLLYSP PYESSTYECS ACSEYGSGFV
101: YNCSICQFDL HVGCISMPES VEREGHEHPL TLLYCSPYTN GLIVKCDVCQ ETVPDHLWSY YCKECDYGTH LHSCEVEEVV EPKRGGGKAS TSGNKGGGRG
201: SAASELAAML EAQREMDRMQ IELHMEMQRA KIAKKARKAC LKLI

Best Arabidopsis Sequence Match ( AT2G44370.1 )
(BLAST)

001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI

Arabidopsis Description

At2g44370 [Source:UniProtKB/TrEMBL;Acc:O64871]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.