CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71678	Canola	plastid	29.41	88.89
AT2G44400.1	Thale cress	mitochondrion, nucleus, peroxisome, vacuole	30.39	84.93
Bra037652.1-P	Field mustard	cytosol, plastid	70.1	70.27
PGSC0003DMT400016143	Potato	nucleus	26.47	28.42
Solyc01g073890.2.1	Tomato	cytosol	26.47	28.35
CDY23431	Canola	nucleus	16.18	26.72
CDY30468	Canola	nucleus	16.18	26.72
CDX67465	Canola	cytosol	15.2	26.61
CDY17855	Canola	nucleus	15.69	26.45
VIT_08s0007g06630.t01	Wine grape	cytosol	17.4	25.91
CDY67171	Canola	cytosol	14.71	25.75
CDY22774	Canola	mitochondrion	10.78	25.43
CDY23430	Canola	nucleus	15.2	25.0
CDX83428	Canola	nucleus	14.71	24.9
CDX95602	Canola	nucleus	14.71	24.79
CDY30467	Canola	nucleus	14.71	24.59
CDY23432	Canola	mitochondrion, nucleus	11.03	23.81
CDY30469	Canola	mitochondrion, nucleus	11.27	23.59
CDY71677	Canola	mitochondrion, nucleus	10.78	23.28
CDY22552	Canola	cytosol	15.2	22.79
CDY35387	Canola	cytosol	14.95	22.43
CDY17853	Canola	mitochondrion, nucleus, plastid	9.07	20.22
CDX79762	Canola	nucleus, plastid	9.31	18.54
CDY42552	Canola	mitochondrion	8.33	14.98
CDX71437	Canola	plastid	24.26	14.95
CDY04505	Canola	plastid	23.77	14.56

Protein Annotations

EnsemblPlants:CDY30470	EnsemblPlantsGene:GSBRNA2T00045175001	InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF86	PFAM:PF03107
PFscan:PS51257	ProteinID:CDY30470	ProteinID:CDY30470.1	SEG:seg	SUPFAM:SSF57889	UniParc:UPI0004EE1D8D
UniProt:A0A078GVD0	MapMan:35.2	:	:	:	:

Description

BnaA04g25710DBnaA04g25710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVD0]

Coordinates

chrLK032253:+:375369..376769

Molecular Weight (calculated)

43022.7 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.179

Length

408 amino acids

Sequence
(BLAST)

001: MGRPKPEDSI RHFSHPHPLF NSSLNPQANS SSSSCVVCKL KLLNLPSYTC KPCNFHIHLK CSELPQKIRH PFDKNHLLSL ISSPKYQEGT FRCDACGKNG
101: DGFAYHCGDC GIDLHTVCAN MPSRVTHQSH PHHQLYLTFS MPSPGGSGSG SRSAAAASFR CSVCQGLGSN SWLYSCKECG GFDAHLLCAR KKLPSPTNMV
201: QHGPNRPMQP HSIATTPFVN VPSPVFNNPY PLGTPTMSPI IRPMINEMIN NLVTNTPQSP SQVSQLLDLL GPFGLGGGSG SSSSSGNLGF DPSVFQSVNQ
301: PFGLGGGSGS SSSFGYLGFD PSVFQSVNQP FGLGGGSGSS SSFGYLGFDP SVFQSVNQPF GLGGGSGSSS SFGYLGFDPS VFPSVDPSVF AGFDPSLLST
401: LFSGLGFL

Best Arabidopsis Sequence Match ( AT2G44400.1 )
(BLAST)

001: MICKLKLLSL PSYSSKPCNF YIHLKCSELP QKIRHPFDRN HLLSLISSPK YQEGRFRCNA CGKDGDRLAY HCGDCGIDLH TVCANMPSRV THQSHPHHQL
101: SLTFSMPPGG PGSAAASSFQ CCVCRGLGSN SWLYSCGECS GFDAHL

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:O64874]
SUBAcon: [mitochondrion,peroxisome,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.