Factsheet for VIT_08s0007g06630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G44400.1	Thale cress	mitochondrion, nucleus, peroxisome, vacuole	19.71	36.99
CDY71678	Canola	plastid	15.33	31.11
VIT_08s0007g06620.t01	Wine grape	cytosol	23.36	25.4
VIT_08s0007g05730.t01	Wine grape	cytosol	11.31	24.22
Solyc01g073890.2.1	Tomato	cytosol	30.29	21.78
PGSC0003DMT400016143	Potato	nucleus	29.56	21.32
Solyc03g097960.1.1	Tomato	cytosol	26.28	20.4
PGSC0003DMT400083994	Potato	nucleus	25.55	19.83
PGSC0003DMT400069576	Potato	cytosol	26.64	19.73
Solyc06g072460.1.1	Tomato	cytosol	26.28	19.46
VIT_06s0004g01230.t01	Wine grape	cytosol	20.44	17.55
CDY30470	Canola	cytosol, plastid	25.91	17.4
Bra037652.1-P	Field mustard	cytosol, plastid	24.82	16.71
CDY04505	Canola	plastid	30.66	12.61
CDX71437	Canola	plastid	29.56	12.24
AT2G27660.1	Thale cress	plastid	29.2	11.14

Protein Annotations

MapMan:35.2	ProteinID:CCB55238	ProteinID:CCB55238.1	InterPro:DC1	UniProt:F6HLI2	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869	PFAM:PF03107	PFscan:PS51257
PANTHER:PTHR13871	PANTHER:PTHR13871:SF53	SUPFAM:SSF57889	SUPFAM:SSF57903	UniParc:UPI0002108505	ArrayExpress:VIT_08s0007g06630
EnsemblPlantsGene:VIT_08s0007g06630	EnsemblPlants:VIT_08s0007g06630.t01	InterPro:Znf_FYVE_PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:20321805..20325413

Molecular Weight (calculated)

30929.0 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.437

Length

274 amino acids

Sequence
(BLAST)

001: MKATFPSKCE IKTLLQKVLK HLPTSGWVYG CNTCNYFLHK PCSKMPEILN HPFDPDHTLL LFPNPVYPGG AFICDACREI GTGFSYHCTE CQIDLHNLCA
101: FLPTSVDHSS HHHTLDLWSG SPYKNEEFLC DICQDPGSKQ WLYRCNSCQF DAHMSCALVD IQSQHTSKVQ KRERQQLGKP QNTPTKSSEP IHRFASWSQS
201: GMRSPWIQTQ YSIPRTRDGV MGRYHYGRDP IPRFTHTTRD GVMGHVVKGM VDGMAQQAGM AVLQGFLGGF LGGF

Best Arabidopsis Sequence Match ( AT2G27660.1 )
(BLAST)

001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.