Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083994 | Potato | nucleus | 90.08 | 90.08 |
| Solyc06g072460.1.1 | Tomato | cytosol | 58.64 | 55.95 |
| Solyc01g073850.1.1 | Tomato | cytosol | 9.63 | 30.63 |
| Solyc01g073880.2.1 | Tomato | cytosol | 16.71 | 30.57 |
| Solyc01g073820.2.1 | Tomato | cytosol, extracellular, nucleus | 20.11 | 27.41 |
| Solyc01g073890.2.1 | Tomato | cytosol | 28.61 | 26.51 |
| VIT_08s0007g06630.t01 | Wine grape | cytosol | 20.4 | 26.28 |
| Solyc01g073800.2.1 | Tomato | nucleus | 17.56 | 25.0 |
| Solyc01g073860.2.1 | Tomato | cytosol | 16.71 | 25.0 |
| Solyc01g073810.2.1 | Tomato | nucleus | 17.0 | 24.1 |
| Solyc12g038680.1.1 | Tomato | nucleus | 13.6 | 22.22 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 17.56 | 20.0 |
| Solyc01g073780.2.1 | Tomato | nucleus | 17.56 | 15.62 |
| CDX71437 | Canola | plastid | 29.18 | 15.56 |
| CDY04505 | Canola | plastid | 29.18 | 15.47 |
| AT2G27660.1 | Thale cress | plastid | 28.05 | 13.79 |
| Solyc01g073840.1.1 | Tomato | nucleus | 17.85 | 13.73 |
| Solyc02g068680.1.1 | Tomato | nucleus | 17.85 | 13.67 |
| Solyc08g014370.1.1 | Tomato | nucleus, plasma membrane, plastid | 15.01 | 9.94 |
Protein Annotations
| EnsemblPlants:Solyc03g097960.1.1 | EnsemblPlantsGene:Solyc03g097960.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 |
| InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF83 | PFAM:PF03107 | SEG:seg | SUPFAM:SSF57889 |
| UniParc:UPI0002768595 | UniProt:K4BJL3 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3:-:60336727..60337788
Molecular Weight (calculated)
38771.9 Da
IEP (calculated)
7.785
GRAVY (calculated)
-0.539
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRFKLNGDP TPRLKHFSHP HELELCIQLQ NNPTPCSGCK LPSSPQMYTC KPCNFTLHLS CTQFPKLINH PAHPDHTLAL LPRSKYPHGL FNCDACNHRG
101: DGFSYHCRDC EYDLHVICAS KPLKITHQLH QCQLELTFKN PYADAKGFSC DVCQKIGVKQ WLYRCGTCDF DVHLDCSNPN PNSAVQGSTI LQHHHSFPGA
201: TSSHNQFQQP PMVEKKRPNQ LVQSANSGAM GIQLPQAPML SGQAMPNQYT QTSQGAAQAR PNPLLYSTST GSIPQHQSLQ PPLIQGLVRP DQYLQSPGTN
301: NDMMNAAFQG LVEVAAQQVG QTIMQGFVGG GNNSDGNEGS SILRSIFGDS SQN
101: DGFSYHCRDC EYDLHVICAS KPLKITHQLH QCQLELTFKN PYADAKGFSC DVCQKIGVKQ WLYRCGTCDF DVHLDCSNPN PNSAVQGSTI LQHHHSFPGA
201: TSSHNQFQQP PMVEKKRPNQ LVQSANSGAM GIQLPQAPML SGQAMPNQYT QTSQGAAQAR PNPLLYSTST GSIPQHQSLQ PPLIQGLVRP DQYLQSPGTN
301: NDMMNAAFQG LVEVAAQQVG QTIMQGFVGG GNNSDGNEGS SILRSIFGDS SQN
001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.