Factsheet for Solyc01g073810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016177	Potato	nucleus	80.72	83.75
PGSC0003DMT400074529	Potato	cytosol	76.71	79.25
PGSC0003DMT400074528	Potato	nucleus	76.31	77.55
Solyc01g073800.2.1	Tomato	nucleus	66.27	66.53
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	64.26	61.78
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	41.37	33.23
Solyc01g073880.2.1	Tomato	cytosol	23.29	30.05
Solyc01g073850.1.1	Tomato	cytosol	12.85	28.83
VIT_08s0007g06620.t01	Wine grape	cytosol	26.51	26.19
AT2G42060.1	Thale cress	cytosol	28.11	26.12
Bra000252.1-P	Field mustard	cytosol	28.51	26.1
CDY35387	Canola	cytosol	28.51	26.1
CDY22552	Canola	cytosol	28.11	25.74
Solyc01g073860.2.1	Tomato	cytosol	23.69	25.0
Solyc01g073840.1.1	Tomato	nucleus	40.16	21.79
Solyc01g073780.2.1	Tomato	nucleus	32.93	20.65
Solyc12g038680.1.1	Tomato	nucleus	15.26	17.59
Solyc03g097960.1.1	Tomato	cytosol	24.1	17.0
Solyc06g072460.1.1	Tomato	cytosol	24.1	16.22
Solyc01g073890.2.1	Tomato	cytosol	23.69	15.49
Solyc02g068680.1.1	Tomato	nucleus	24.9	13.45
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	26.51	12.38

Protein Annotations

MapMan:35.2	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0046872	GO:GO:0098869	UniProt:K4AXC6	PFAM:PF03107	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60
SMART:SM00249	SUPFAM:SSF57889	EnsemblPlantsGene:Solyc01g073810.2	EnsemblPlants:Solyc01g073810.2.1	UniParc:UPI0002761937	InterPro:Znf_PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:81170011..81170807

Molecular Weight (calculated)

27626.1 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.449

Length

249 amino acids

Sequence
(BLAST)

001: MGRLNGGTNE GKQHFSHQHV LKQIVNPTEL TLTCNACEKP NNTNKPFYGC NTCQYFLHEN CFNAPRILIH SSHPSHPLTL RQISSYVSGS YICNACGSGG
101: NGFCFNCSDC EFDIHLQCAS CPSSTLVDKH THQLELHYGY PEDNEYVCDI CFVRMNNDNW FYYCGGCDFA SHLNCAIISP EVGVFPKQQC PNPNSNPNPS
201: QNSNPSRNSS ANAAVEMINS VNDDHDRLIA AQIGAQIAAR SRQAILDLW

Best Arabidopsis Sequence Match ( AT2G42060.1 )
(BLAST)

001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV

Arabidopsis Description

At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.