Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074529 | Potato | cytosol | 88.75 | 88.38 |
| Solyc01g073810.2.1 | Tomato | nucleus | 83.75 | 80.72 |
| PGSC0003DMT400074528 | Potato | nucleus | 80.0 | 78.37 |
| PGSC0003DMT400074527 | Potato | cytosol | 79.17 | 77.87 |
| PGSC0003DMT400074525 | Potato | cytosol | 77.92 | 76.64 |
| PGSC0003DMT400016178 | Potato | cytosol | 80.42 | 76.59 |
| PGSC0003DMT400074531 | Potato | nucleus | 73.75 | 68.08 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 65.83 | 61.24 |
| PGSC0003DMT400074526 | Potato | nucleus | 67.08 | 60.53 |
| PGSC0003DMT400016174 | Potato | nucleus | 41.67 | 45.25 |
| PGSC0003DMT400016183 | Potato | nucleus | 40.42 | 33.8 |
| PGSC0003DMT400016188 | Potato | nucleus | 41.67 | 27.4 |
| AT2G42060.1 | Thale cress | cytosol | 30.0 | 26.87 |
| Bra000252.1-P | Field mustard | cytosol | 30.42 | 26.84 |
| CDY35387 | Canola | cytosol | 30.42 | 26.84 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 27.5 | 26.19 |
| CDY22552 | Canola | cytosol | 29.58 | 26.1 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 41.25 | 24.94 |
| PGSC0003DMT400016180 | Potato | cytosol | 14.58 | 21.6 |
| PGSC0003DMT400093177 | Potato | cytosol | 12.08 | 21.48 |
| PGSC0003DMT400016187 | Potato | nucleus | 39.17 | 20.48 |
| PGSC0003DMT400074532 | Potato | nucleus | 33.33 | 20.36 |
| PGSC0003DMT400083994 | Potato | nucleus | 27.08 | 18.41 |
| PGSC0003DMT400069576 | Potato | cytosol | 25.83 | 16.76 |
| PGSC0003DMT400048642 | Potato | cytosol | 4.17 | 16.67 |
| PGSC0003DMT400016143 | Potato | nucleus | 25.83 | 16.32 |
| PGSC0003DMT400085165 | Potato | extracellular | 22.08 | 14.48 |
| PGSC0003DMT400027065 | Potato | nucleus | 25.42 | 13.23 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 27.5 | 12.31 |
| PGSC0003DMT400029742 | Potato | cytosol | 22.08 | 12.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016177 | EnsemblPlantsGene:PGSC0003DMG400006321 | EntrezGene:102579475 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:DC1 | InterPro:Znf_PHD | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | PGSC:PGSC0003DMG400006321 |
| RefSeq:XP_006359188.1 | SEG:seg | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI000296D11C | UniProt:M1A784 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006321]
Coordinates
chr1:+:66805357..66806241
Molecular Weight (calculated)
26735.4 Da
IEP (calculated)
6.296
GRAVY (calculated)
-0.369
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRLNGGTNE GKQHFSHQHV LKQIVNPTET LTCNACEKPN NSNKPFYGCN TCQYFLHENC FNAPRILNHS SHPLHPLTLH QIPSYASGSY ICNACGSVGN
101: GFCYNCVDCD FDIHLQCASC PSSILVDKLP HQLEIQYGYP EDSEYVCDIC SVMMNNDNWF YYCGGCDFAS HLNCAIISPE VGVFPKQQRP NPNSNPSRNS
201: HVNAAVEMIN SVNDDHDRFI AAQIAAQIDA RGRRAMLDLI
101: GFCYNCVDCD FDIHLQCASC PSSILVDKLP HQLEIQYGYP EDSEYVCDIC SVMMNNDNWF YYCGGCDFAS HLNCAIISPE VGVFPKQQRP NPNSNPSRNS
201: HVNAAVEMIN SVNDDHDRFI AAQIAAQIDA RGRRAMLDLI
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.