Factsheet for PGSC0003DMT400016174

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016183	Potato	nucleus	74.66	57.49
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	80.09	57.1
PGSC0003DMT400016188	Potato	nucleus	82.35	49.86
PGSC0003DMT400074526	Potato	nucleus	53.85	44.74
PGSC0003DMT400074525	Potato	cytosol	49.32	44.67
PGSC0003DMT400074527	Potato	cytosol	48.87	44.26
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	51.13	43.8
PGSC0003DMT400074529	Potato	cytosol	47.51	43.57
PGSC0003DMT400074531	Potato	nucleus	50.23	42.69
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	75.57	42.07
PGSC0003DMT400016178	Potato	cytosol	47.96	42.06
PGSC0003DMT400016177	Potato	nucleus	45.25	41.67
PGSC0003DMT400074528	Potato	nucleus	44.34	40.0
PGSC0003DMT400016187	Potato	nucleus	66.52	32.03
AT2G42060.1	Thale cress	cytosol	33.94	27.99
CDY35387	Canola	cytosol	33.94	27.57
Bra000252.1-P	Field mustard	cytosol	33.94	27.57
CDY22552	Canola	cytosol	33.48	27.21
VIT_08s0007g06620.t01	Wine grape	cytosol	30.77	26.98
PGSC0003DMT400074532	Potato	nucleus	46.15	25.95
PGSC0003DMT400016180	Potato	cytosol	15.38	20.99
PGSC0003DMT400093177	Potato	cytosol	12.67	20.74
PGSC0003DMT400048642	Potato	cytosol	5.43	20.0
PGSC0003DMT400069576	Potato	cytosol	30.32	18.11
PGSC0003DMT400083994	Potato	nucleus	28.51	17.85
PGSC0003DMT400016143	Potato	nucleus	28.05	16.32
PGSC0003DMT400027065	Potato	nucleus	25.79	12.36
PGSC0003DMT400029742	Potato	cytosol	24.43	12.24
PGSC0003DMT400085165	Potato	extracellular	19.0	11.48
PGSC0003DMT400094028	Potato	plasma membrane	25.79	10.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400016174	EnsemblPlantsGene:PGSC0003DMG400006320	EntrezGene:102578819	InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60
PFAM:PF03107	PGSC:PGSC0003DMG400006320	RefSeq:XP_015169752.1	SEG:seg	SUPFAM:SSF57889	UniParc:UPI00029490EB
UniProt:M1A783	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006320]

Coordinates

chr1:+:66826868..66827533

Molecular Weight (calculated)

25106.7 Da

IEP (calculated)

6.487

GRAVY (calculated)

-0.420

Length

221 amino acids

Sequence
(BLAST)

001: MGREKRTCQG KQHFSHPHFL KLIVNPSETL TCNACEQPNI TTTFYGCNTC QYFLHENCLN APRFLDHSSH PSHHLTLLPT PTYSNSSYTC KACGSAGNGC
101: SFSCACCEFD VHMHCALLPQ TVVLPQRHHH ELELIFESPF YDDADDGSNI FVCDLCRDIV DLNNWLYYCT DCDFGTHLGC AISKSFCQQE RPKLLGNKPR
201: ENPIVIRKTE EVPIKNEKEI N

Best Arabidopsis Sequence Match ( AT2G27660.1 )
(BLAST)

001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.