Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073780.2.1 | Tomato | nucleus | 65.39 | 64.74 |
| PGSC0003DMT400016174 | Potato | nucleus | 25.95 | 46.15 |
| PGSC0003DMT400016183 | Potato | nucleus | 28.24 | 38.68 |
| PGSC0003DMT400074526 | Potato | nucleus | 25.19 | 37.22 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 24.17 | 36.82 |
| PGSC0003DMT400074525 | Potato | cytosol | 22.65 | 36.48 |
| PGSC0003DMT400074527 | Potato | cytosol | 22.39 | 36.07 |
| PGSC0003DMT400016178 | Potato | cytosol | 22.9 | 35.71 |
| PGSC0003DMT400074531 | Potato | nucleus | 23.41 | 35.38 |
| PGSC0003DMT400074529 | Potato | cytosol | 21.63 | 35.27 |
| PGSC0003DMT400016177 | Potato | nucleus | 20.36 | 33.33 |
| PGSC0003DMT400074528 | Potato | nucleus | 20.61 | 33.06 |
| PGSC0003DMT400016188 | Potato | nucleus | 27.99 | 30.14 |
| AT2G42060.1 | Thale cress | cytosol | 20.1 | 29.48 |
| CDY35387 | Canola | cytosol | 20.1 | 29.04 |
| Bra000252.1-P | Field mustard | cytosol | 20.1 | 29.04 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 18.58 | 28.97 |
| CDY22552 | Canola | cytosol | 19.59 | 28.31 |
| PGSC0003DMT400016180 | Potato | cytosol | 11.45 | 27.78 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 27.99 | 27.71 |
| PGSC0003DMT400093177 | Potato | cytosol | 8.4 | 24.44 |
| PGSC0003DMT400016187 | Potato | nucleus | 27.74 | 23.75 |
| PGSC0003DMT400048642 | Potato | cytosol | 3.31 | 21.67 |
| PGSC0003DMT400083994 | Potato | nucleus | 16.29 | 18.13 |
| PGSC0003DMT400069576 | Potato | cytosol | 15.52 | 16.49 |
| PGSC0003DMT400016143 | Potato | nucleus | 14.76 | 15.26 |
| PGSC0003DMT400027065 | Potato | nucleus | 16.54 | 14.1 |
| PGSC0003DMT400029742 | Potato | cytosol | 15.78 | 14.06 |
| PGSC0003DMT400085165 | Potato | extracellular | 12.21 | 13.11 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 16.29 | 11.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074532 | EnsemblPlantsGene:PGSC0003DMG400028973 | InterPro:DC1 | InterPro:Znf_FYVE_PHD | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | PGSC:PGSC0003DMG400028973 | SEG:seg | SUPFAM:SSF57889 | SUPFAM:SSF57903 | UniParc:UPI000296220D |
| UniProt:M1CTU5 | MapMan:35.2 | : | : | : | : |
Description
CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028973]
Coordinates
chr1:+:66895605..66896786
Molecular Weight (calculated)
44746.7 Da
IEP (calculated)
6.164
GRAVY (calculated)
-0.684
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYQDNQHFS HHHILKKLVL DENEELQCQA CEKFIFEPFH GCISCNFYLH DNCLNAPRSL VHPSHLSHPL TLLPTPTYSC RSFTCNACGS EGRSCSLSCA
101: HCEFDLHVQC AVLPQTVLLD QHQHHELKLI FDSSFGDEDE SFIFVCDFCN GKVEENSWLY YCADCDFGTH IECSSISKYV NKPKDNAVIT KPNEELVISK
201: STKSPVTITE KKTAKNPKMK LVVESPVKKL VDELSEAEEN AVIMKPNVEE PINNEITEQV FNTSTEDPVR KTEKKFAKSV RVLNPKMKTV EKSQEENAEI
301: LKPKEVPTTR KTKKKSDKNP GANHKRKPVS ESSQDENSAD KLREGEEGEE SSELTYYEAQ CRLKEQHMKN MIILQAMDNA ASYVGPSGSY YYY
101: HCEFDLHVQC AVLPQTVLLD QHQHHELKLI FDSSFGDEDE SFIFVCDFCN GKVEENSWLY YCADCDFGTH IECSSISKYV NKPKDNAVIT KPNEELVISK
201: STKSPVTITE KKTAKNPKMK LVVESPVKKL VDELSEAEEN AVIMKPNVEE PINNEITEQV FNTSTEDPVR KTEKKFAKSV RVLNPKMKTV EKSQEENAEI
301: LKPKEVPTTR KTKKKSDKNP GANHKRKPVS ESSQDENSAD KLREGEEGEE SSELTYYEAQ CRLKEQHMKN MIILQAMDNA ASYVGPSGSY YYY
001: MGSGKTNRPS VRHPSHNHPL RVFNSKEEDE IICSGCEHDL IGQAFKCTKS ECDYFLHKSC FDLPGEIHHK SHTNHPLTLL HSPPNGLSTY TCDACGEYGS
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SL28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.