Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016174 | Potato | nucleus | 42.07 | 75.57 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 57.43 | 73.55 |
| PGSC0003DMT400016188 | Potato | nucleus | 60.96 | 66.3 |
| PGSC0003DMT400016183 | Potato | nucleus | 38.29 | 52.96 |
| PGSC0003DMT400074527 | Potato | cytosol | 27.2 | 44.26 |
| PGSC0003DMT400074526 | Potato | nucleus | 29.47 | 43.98 |
| PGSC0003DMT400074531 | Potato | nucleus | 28.21 | 43.08 |
| PGSC0003DMT400074525 | Potato | cytosol | 26.45 | 43.03 |
| PGSC0003DMT400016178 | Potato | cytosol | 27.2 | 42.86 |
| PGSC0003DMT400074528 | Potato | nucleus | 26.45 | 42.86 |
| PGSC0003DMT400074529 | Potato | cytosol | 25.44 | 41.91 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 27.2 | 41.86 |
| PGSC0003DMT400016177 | Potato | nucleus | 24.94 | 41.25 |
| PGSC0003DMT400016187 | Potato | nucleus | 42.82 | 37.04 |
| CDY35387 | Canola | cytosol | 20.15 | 29.41 |
| Bra000252.1-P | Field mustard | cytosol | 20.15 | 29.41 |
| AT2G42060.1 | Thale cress | cytosol | 19.4 | 28.73 |
| CDY22552 | Canola | cytosol | 19.65 | 28.68 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 18.14 | 28.57 |
| PGSC0003DMT400074532 | Potato | nucleus | 27.71 | 27.99 |
| PGSC0003DMT400016180 | Potato | cytosol | 11.08 | 27.16 |
| PGSC0003DMT400048642 | Potato | cytosol | 3.53 | 23.33 |
| PGSC0003DMT400093177 | Potato | cytosol | 7.3 | 21.48 |
| PGSC0003DMT400069576 | Potato | cytosol | 17.38 | 18.65 |
| PGSC0003DMT400083994 | Potato | nucleus | 16.12 | 18.13 |
| PGSC0003DMT400016143 | Potato | nucleus | 16.88 | 17.63 |
| PGSC0003DMT400027065 | Potato | nucleus | 19.9 | 17.14 |
| PGSC0003DMT400029742 | Potato | cytosol | 15.87 | 14.29 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 17.38 | 12.87 |
| PGSC0003DMT400085165 | Potato | extracellular | 10.58 | 11.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016179 | EnsemblPlantsGene:PGSC0003DMG400006323 | EntrezGene:102580796 | InterPro:DC1 | InterPro:Znf_FYVE_PHD | ncoils:Coil |
| PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | PGSC:PGSC0003DMG400006323 | RefSeq:XP_015169778.1 | SEG:seg |
| SUPFAM:SSF57889 | SUPFAM:SSF57903 | UniParc:UPI00029542B6 | UniProt:M1A786 | MapMan:35.2 | : |
Description
CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006323]
Coordinates
chr1:+:66778011..66779607
Molecular Weight (calculated)
45336.2 Da
IEP (calculated)
4.361
GRAVY (calculated)
-0.719
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGREKRICQG KQHFSHPHFL KLIVNPSETL TCNACEQPNI TNTTFYGCNT CQYFLHENCL NAPRFLDHSS HPSHHLTLLP TPTYSNRSYT CKACGSAGNG
101: CSFSCACCEF DVHMHCALLP QTVVLPQHHH HELELIFESP LYDDADDGSN VFVCDICRDN VDLNNWLYYC ADCDFGTHLE CAISKSFSQK ERPKLLGNKP
201: RENPVVIRKT VPIKNEKEIN QDEEAEEEEE EAEAEDEEEE EEEAEAEAED EEEAEEEEKE EEELNYPRSI LIDKHQHELE LCFGSPYEDK DTLFACDICN
301: IIMDSDESLY YCADCDFGSH LHCASPDADV LPSSHQRRNP NPKYQIPNVN SSVEMINSVS DAHERLIAAQ IESQIARRGR QAILDSIDGP SPRRYYY
101: CSFSCACCEF DVHMHCALLP QTVVLPQHHH HELELIFESP LYDDADDGSN VFVCDICRDN VDLNNWLYYC ADCDFGTHLE CAISKSFSQK ERPKLLGNKP
201: RENPVVIRKT VPIKNEKEIN QDEEAEEEEE EAEAEDEEEE EEEAEAEAED EEEAEEEEKE EEELNYPRSI LIDKHQHELE LCFGSPYEDK DTLFACDICN
301: IIMDSDESLY YCADCDFGSH LHCASPDADV LPSSHQRRNP NPKYQIPNVN SSVEMINSVS DAHERLIAAQ IESQIARRGR QAILDSIDGP SPRRYYY
001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
Arabidopsis Description
At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.