Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073800.2.1 | Tomato | nucleus | 81.01 | 84.27 |
| PGSC0003DMT400074531 | Potato | nucleus | 79.07 | 78.46 |
| PGSC0003DMT400074529 | Potato | cytosol | 66.28 | 70.95 |
| PGSC0003DMT400016178 | Potato | cytosol | 68.99 | 70.63 |
| PGSC0003DMT400074526 | Potato | nucleus | 72.09 | 69.92 |
| PGSC0003DMT400074525 | Potato | cytosol | 64.34 | 68.03 |
| PGSC0003DMT400074527 | Potato | cytosol | 63.57 | 67.21 |
| PGSC0003DMT400016177 | Potato | nucleus | 61.24 | 65.83 |
| PGSC0003DMT400074528 | Potato | nucleus | 59.69 | 62.86 |
| PGSC0003DMT400016174 | Potato | nucleus | 43.8 | 51.13 |
| PGSC0003DMT400016183 | Potato | nucleus | 44.19 | 39.72 |
| PGSC0003DMT400016188 | Potato | nucleus | 44.96 | 31.78 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 41.86 | 27.2 |
| CDY35387 | Canola | cytosol | 27.91 | 26.47 |
| Bra000252.1-P | Field mustard | cytosol | 27.91 | 26.47 |
| CDY22552 | Canola | cytosol | 27.52 | 26.1 |
| AT2G42060.1 | Thale cress | cytosol | 26.36 | 25.37 |
| PGSC0003DMT400016187 | Potato | nucleus | 43.41 | 24.4 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 23.64 | 24.21 |
| PGSC0003DMT400074532 | Potato | nucleus | 36.82 | 24.17 |
| PGSC0003DMT400093177 | Potato | cytosol | 11.63 | 22.22 |
| PGSC0003DMT400016180 | Potato | cytosol | 13.18 | 20.99 |
| PGSC0003DMT400048642 | Potato | cytosol | 4.65 | 20.0 |
| PGSC0003DMT400083994 | Potato | nucleus | 27.13 | 19.83 |
| PGSC0003DMT400069576 | Potato | cytosol | 26.36 | 18.38 |
| PGSC0003DMT400016143 | Potato | nucleus | 26.74 | 18.16 |
| PGSC0003DMT400085165 | Potato | extracellular | 19.77 | 13.93 |
| PGSC0003DMT400027065 | Potato | nucleus | 22.09 | 12.36 |
| PGSC0003DMT400029742 | Potato | cytosol | 19.77 | 11.56 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 23.64 | 11.38 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074530 | EnsemblPlantsGene:PGSC0003DMG400028971 | EntrezGene:107062965 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | PGSC:PGSC0003DMG400028971 | RefSeq:XP_015169758.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI000296D37D |
| UniProt:M1CTU3 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028971]
Coordinates
chr1:+:66885234..66886308
Molecular Weight (calculated)
28492.3 Da
IEP (calculated)
7.308
GRAVY (calculated)
-0.507
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQNKSTNA TSQGKQHFSH PHILKPIVNP PETLTCNACE QPNNYKPNFH GCNSCQYFLH DNCFNAPRFL NHSSHPSHPL TLHQIPSYSS RSYTCKACGS
101: AGNGFCFSCA ACEFDIHLQC ASSPSSILVN SHLHQLELHF GSPYEDKNIK YNCDMCNVIM NKDDWLYYCA GCDFGSHLRC AITSPEVGVF PKQQRPIPNS
201: NPNPNPSPSQ NSNSNSNLNP NAAVEMINSV NAAHEQLIAA QIRAQFVARG QEAALDLI
101: AGNGFCFSCA ACEFDIHLQC ASSPSSILVN SHLHQLELHF GSPYEDKNIK YNCDMCNVIM NKDDWLYYCA GCDFGSHLRC AITSPEVGVF PKQQRPIPNS
201: NPNPNPSPSQ NSNSNSNLNP NAAVEMINSV NAAHEQLIAA QIRAQFVARG QEAALDLI
001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI
Arabidopsis Description
At2g44370 [Source:UniProtKB/TrEMBL;Acc:O64871]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.