Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074525 | Potato | cytosol | 95.9 | 95.9 |
| PGSC0003DMT400016178 | Potato | cytosol | 91.8 | 88.89 |
| PGSC0003DMT400016177 | Potato | nucleus | 77.87 | 79.17 |
| PGSC0003DMT400074529 | Potato | cytosol | 77.05 | 78.01 |
| PGSC0003DMT400074531 | Potato | nucleus | 75.0 | 70.38 |
| PGSC0003DMT400074528 | Potato | nucleus | 68.03 | 67.76 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 67.21 | 63.57 |
| PGSC0003DMT400074526 | Potato | nucleus | 66.39 | 60.9 |
| PGSC0003DMT400016174 | Potato | nucleus | 44.26 | 48.87 |
| PGSC0003DMT400016183 | Potato | nucleus | 43.44 | 36.93 |
| PGSC0003DMT400016188 | Potato | nucleus | 44.26 | 29.59 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 44.26 | 27.2 |
| AT2G42060.1 | Thale cress | cytosol | 29.51 | 26.87 |
| Bra000252.1-P | Field mustard | cytosol | 29.51 | 26.47 |
| CDY35387 | Canola | cytosol | 29.51 | 26.47 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 26.64 | 25.79 |
| CDY22552 | Canola | cytosol | 28.69 | 25.74 |
| PGSC0003DMT400093177 | Potato | cytosol | 12.7 | 22.96 |
| PGSC0003DMT400016187 | Potato | nucleus | 42.21 | 22.44 |
| PGSC0003DMT400074532 | Potato | nucleus | 36.07 | 22.39 |
| PGSC0003DMT400016180 | Potato | cytosol | 13.52 | 20.37 |
| PGSC0003DMT400083994 | Potato | nucleus | 28.28 | 19.55 |
| PGSC0003DMT400048642 | Potato | cytosol | 4.51 | 18.33 |
| PGSC0003DMT400069576 | Potato | cytosol | 27.05 | 17.84 |
| PGSC0003DMT400016143 | Potato | nucleus | 27.46 | 17.63 |
| PGSC0003DMT400085165 | Potato | extracellular | 20.49 | 13.66 |
| PGSC0003DMT400027065 | Potato | nucleus | 24.18 | 12.8 |
| PGSC0003DMT400029742 | Potato | cytosol | 22.54 | 12.47 |
| PGSC0003DMT400094028 | Potato | plasma membrane | 26.23 | 11.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074527 | EnsemblPlantsGene:PGSC0003DMG400028968 | EntrezGene:107062966 | InterPro:DC1 | InterPro:Znf_FYVE_PHD | PANTHER:PTHR13871 |
| PANTHER:PTHR13871:SF60 | PFAM:PF03107 | PGSC:PGSC0003DMG400028968 | RefSeq:XP_015169759.1 | SEG:seg | SUPFAM:SSF57889 |
| SUPFAM:SSF57903 | UniParc:UPI0002953FA2 | UniProt:M1CTU0 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028968]
Coordinates
chr1:+:66855451..66856264
Molecular Weight (calculated)
27111.6 Da
IEP (calculated)
6.204
GRAVY (calculated)
-0.413
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRLNGGTNA GKQHFSHDHI LKLIANPTET LTCNACEQPN NTNKPFYGCN TCQYFLHENC FNAPLFLNHS SHPSHPLTLH HPPYAGGYYI CNACGSDGNG
101: FCYNCAACDF DIHLQCASCP SSILVDKHTH QLELHFGSPD EDKDSKYVCD ICFVTMNNDN WLYYCAGCDF ASHLHCAITS PEVGVFPKQH HPNPNPNPNS
201: IRNSNVNEVV DMINSVNDDH DRLIAAQIAA QIDAQSRRAM LDLF
101: FCYNCAACDF DIHLQCASCP SSILVDKHTH QLELHFGSPD EDKDSKYVCD ICFVTMNNDN WLYYCAGCDF ASHLHCAITS PEVGVFPKQH HPNPNPNPNS
201: IRNSNVNEVV DMINSVNDDH DRLIAAQIAA QIDAQSRRAM LDLF
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.