Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094028 | Potato | plasma membrane | 34.01 | 27.99 |
| PGSC0003DMT400016174 | Potato | nucleus | 12.24 | 24.43 |
| PGSC0003DMT400093177 | Potato | cytosol | 7.26 | 23.7 |
| PGSC0003DMT400048642 | Potato | cytosol | 3.17 | 23.33 |
| PGSC0003DMT400016183 | Potato | nucleus | 14.97 | 23.0 |
| PGSC0003DMT400074527 | Potato | cytosol | 12.47 | 22.54 |
| PGSC0003DMT400074525 | Potato | cytosol | 12.47 | 22.54 |
| PGSC0003DMT400016178 | Potato | cytosol | 12.7 | 22.22 |
| PGSC0003DMT400027065 | Potato | nucleus | 23.13 | 22.13 |
| PGSC0003DMT400016177 | Potato | nucleus | 12.02 | 22.08 |
| PGSC0003DMT400074528 | Potato | nucleus | 12.24 | 22.04 |
| PGSC0003DMT400016180 | Potato | cytosol | 7.94 | 21.6 |
| PGSC0003DMT400074529 | Potato | cytosol | 11.56 | 21.16 |
| PGSC0003DMT400074526 | Potato | nucleus | 12.7 | 21.05 |
| PGSC0003DMT400074531 | Potato | nucleus | 12.02 | 20.38 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 11.56 | 19.77 |
| PGSC0003DMT400016188 | Potato | nucleus | 14.51 | 17.53 |
| PGSC0003DMT400083994 | Potato | nucleus | 13.61 | 17.0 |
| PGSC0003DMT400016187 | Potato | nucleus | 17.69 | 16.99 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 14.29 | 15.87 |
| PGSC0003DMT400074532 | Potato | nucleus | 14.06 | 15.78 |
| PGSC0003DMT400069576 | Potato | cytosol | 13.15 | 15.68 |
| PGSC0003DMT400016143 | Potato | nucleus | 12.7 | 14.74 |
| PGSC0003DMT400085165 | Potato | extracellular | 9.52 | 11.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029742 | EnsemblPlantsGene:PGSC0003DMG400011429 | EntrezGene:107057841 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF83 |
| PFAM:PF03107 | PGSC:PGSC0003DMG400011429 | RefSeq:XP_015158366.1 | SUPFAM:SSF57889 | UniParc:UPI0002963279 | UniProt:M1ATB5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011429]
Coordinates
chr10:+:59013881..59015523
Molecular Weight (calculated)
50712.1 Da
IEP (calculated)
7.702
GRAVY (calculated)
-0.446
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGLVDKETK PNICRGGQSL QMSQILRFPF ADTSDNEGAL NHFNHRHPLF QSHFRQRERI QCSFCNIVIS GRGYACNKHC DYYLHEVCSN FPREIQHDFH
101: PGSDHNLILR PFKATNREQF HCAACGHDDS VHSLFQSYYG CESCNFNLHV ECASIPITLD QKVKYPLHLF LSFPITSETA TLSCSICTEV VPTSGCWLFY
201: NHKHDYLCHV NCAAVSEYGV ENHSMDRLQN RLQTLATTNR PPTTLEGQPS GNVTHFSHRH TLKEYNSDKS LACNLCRSKY FKGYFCSDCN YFIDRTCFSV
301: PSMIQHMSHP QHPLRLTCYL DYQNENVNCR CCQVNKESSH NRAYYCAPCK FILSCQCAGA PKTLTLASNV SYKLFFEFPF KHENAEVKCK ICSEKVVIKD
401: GLLYYNLERD ETLHVSCALT NESKKKMTSL IPRLNEVRIT E
101: PGSDHNLILR PFKATNREQF HCAACGHDDS VHSLFQSYYG CESCNFNLHV ECASIPITLD QKVKYPLHLF LSFPITSETA TLSCSICTEV VPTSGCWLFY
201: NHKHDYLCHV NCAAVSEYGV ENHSMDRLQN RLQTLATTNR PPTTLEGQPS GNVTHFSHRH TLKEYNSDKS LACNLCRSKY FKGYFCSDCN YFIDRTCFSV
301: PSMIQHMSHP QHPLRLTCYL DYQNENVNCR CCQVNKESSH NRAYYCAPCK FILSCQCAGA PKTLTLASNV SYKLFFEFPF KHENAEVKCK ICSEKVVIKD
401: GLLYYNLERD ETLHVSCALT NESKKKMTSL IPRLNEVRIT E
001: MASRPSVRHP SHNHPLRGHK AQVEDEIICS GCDLDLLGAY FKCTKSECDY FLHKSCFDLP REIRHKSHPD HPLILLYSPQ NNNSTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
Arabidopsis Description
At2g17740 [Source:UniProtKB/TrEMBL;Acc:Q6NQN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.