Factsheet for PGSC0003DMT400074526

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	87.97	90.35
PGSC0003DMT400074529	Potato	cytosol	65.79	72.61
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	69.92	72.09
PGSC0003DMT400074531	Potato	nucleus	67.29	68.85
PGSC0003DMT400016178	Potato	cytosol	64.66	68.25
PGSC0003DMT400074525	Potato	cytosol	61.65	67.21
PGSC0003DMT400016177	Potato	nucleus	60.53	67.08
PGSC0003DMT400074527	Potato	cytosol	60.9	66.39
PGSC0003DMT400074528	Potato	nucleus	55.64	60.41
PGSC0003DMT400016174	Potato	nucleus	44.74	53.85
PGSC0003DMT400016183	Potato	nucleus	43.98	40.77
PGSC0003DMT400016188	Potato	nucleus	45.86	33.42
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	43.98	29.47
CDY35387	Canola	cytosol	28.57	27.94
Bra000252.1-P	Field mustard	cytosol	28.57	27.94
AT2G42060.1	Thale cress	cytosol	27.82	27.61
CDY22552	Canola	cytosol	28.2	27.57
VIT_08s0007g06620.t01	Wine grape	cytosol	25.56	26.98
PGSC0003DMT400016187	Potato	nucleus	43.98	25.49
PGSC0003DMT400074532	Potato	nucleus	37.22	25.19
PGSC0003DMT400093177	Potato	cytosol	11.28	22.22
PGSC0003DMT400048642	Potato	cytosol	4.89	21.67
PGSC0003DMT400083994	Potato	nucleus	28.2	21.25
PGSC0003DMT400016180	Potato	cytosol	12.41	20.37
PGSC0003DMT400069576	Potato	cytosol	25.56	18.38
PGSC0003DMT400016143	Potato	nucleus	25.19	17.63
PGSC0003DMT400027065	Potato	nucleus	23.31	13.45
PGSC0003DMT400085165	Potato	extracellular	17.67	12.84
PGSC0003DMT400029742	Potato	cytosol	21.05	12.7
PGSC0003DMT400094028	Potato	plasma membrane	24.44	12.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400074526	EnsemblPlantsGene:PGSC0003DMG400028967	EntrezGene:102597028	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:DC1	InterPro:IPR013083	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR13871	PANTHER:PTHR13871:SF60	PFAM:PF03107	PGSC:PGSC0003DMG400028967	RefSeq:XP_006359156.1	SEG:seg
SUPFAM:SSF57889	SUPFAM:SSF57903	UniParc:UPI0002967F0F	UniProt:M1CTT9	MapMan:35.2	:

Description

CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028967]

Coordinates

chr1:+:66852942..66853885

Molecular Weight (calculated)

29655.7 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.513

Length

266 amino acids

Sequence
(BLAST)

001: MGRQNRGTNA GPQDKQHFSH SHILKLIVNP TETVLTCNAC EQPNNTSKPF YGCNTCQYFL HENCFNAPRF LNHASHPSHP LTLLPSATYS SCSFTCKACD
101: SAGNGFCFSC ACCEFDIHLQ CASLSSLILV DKHPHQLELN FGSPYEDKDS EYVCDICTEI MNKENWLYYC GGCDFASHLQ CVITSPEVGV FAKQQRPVPN
201: SNSNSNSNPN PNPNPNRNPN ARVEMINSAN EAEEQIMAAQ LRAQIAARGR EACLDLVTPR RRYGYY

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.