Factsheet for PGSC0003DMT400016188

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016174	Potato	nucleus	49.86	82.35
PGSC0003DMT400016183	Potato	nucleus	49.59	63.07
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	66.3	60.96
PGSC0003DMT400074526	Potato	nucleus	33.42	45.86
PGSC0003DMT400074525	Potato	cytosol	30.14	45.08
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	31.78	44.96
PGSC0003DMT400074527	Potato	cytosol	29.59	44.26
PGSC0003DMT400074529	Potato	cytosol	28.77	43.57
PGSC0003DMT400074531	Potato	nucleus	30.41	42.69
PGSC0003DMT400016178	Potato	cytosol	29.32	42.46
PGSC0003DMT400016177	Potato	nucleus	27.4	41.67
PGSC0003DMT400074528	Potato	nucleus	27.67	41.22
PGSC0003DMT400016187	Potato	nucleus	47.4	37.69
VIT_08s0007g06620.t01	Wine grape	cytosol	20.27	29.37
PGSC0003DMT400074532	Potato	nucleus	30.14	27.99
AT2G42060.1	Thale cress	cytosol	20.27	27.61
Bra000252.1-P	Field mustard	cytosol	20.0	26.84
CDY35387	Canola	cytosol	20.0	26.84
CDY22552	Canola	cytosol	19.73	26.47
PGSC0003DMT400016180	Potato	cytosol	10.68	24.07
PGSC0003DMT400048642	Potato	cytosol	3.56	21.67
PGSC0003DMT400093177	Potato	cytosol	7.67	20.74
PGSC0003DMT400083994	Potato	nucleus	17.81	18.41
PGSC0003DMT400069576	Potato	cytosol	18.36	18.11
PGSC0003DMT400016143	Potato	nucleus	17.26	16.58
PGSC0003DMT400027065	Potato	nucleus	18.63	14.75
PGSC0003DMT400029742	Potato	cytosol	17.53	14.51
PGSC0003DMT400094028	Potato	plasma membrane	18.9	12.87
PGSC0003DMT400085165	Potato	extracellular	12.88	12.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400016188	EnsemblPlantsGene:PGSC0003DMG400006327	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:DC1
InterPro:Znf_PHD	ncoils:Coil	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60	PFAM:PF03107	PGSC:PGSC0003DMG400006327
SEG:seg	SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI0002951CA0	UniProt:M1A790	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006327]

Coordinates

chr1:+:66760767..66762276

Molecular Weight (calculated)

42026.1 Da

IEP (calculated)

4.110

GRAVY (calculated)

-0.714

Length

365 amino acids

Sequence
(BLAST)

001: MGREKRACQG KQHFSHPHIL KPIVNPTETL FCNACEQPNI TSNFYGCNTC QYFLHQNCLN APRFLDHSCH PSHHLTLLPI PTYSNRSYTC KACASAGNGF
101: SFSCACCEFD VHMHCALLPQ TVFLSQHHHH DLELIFESPF YDDADDESTV FVCDLCRDNV DLNNWLYYCS DCDFGTHLEC AISKSVSQQE RPKLLGNKPR
201: ENPVVIRKTE EVPIKNEKEI NQEEEAEEEE EVEEEEAEAE DEEEEEEEAE EEEAEAEAED EEEEKEEEEL NYPRSILIDK HQHELELCFG SPYEDKDTLF
301: ACDICSIIMD SDESLYYCAD CDFVLHLECA SPDADVSPTL QQHRNPNYPI PNPNRTVEMI NYVTN

Best Arabidopsis Sequence Match ( AT2G44370.1 )
(BLAST)

001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI

Arabidopsis Description

At2g44370 [Source:UniProtKB/TrEMBL;Acc:O64871]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.