Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35387 | Canola | cytosol | 92.65 | 92.65 |
| AT2G42060.1 | Thale cress | cytosol | 76.84 | 77.99 |
| VIT_08s0007g06620.t01 | Wine grape | cytosol | 42.28 | 45.63 |
| PGSC0003DMT400016174 | Potato | nucleus | 27.21 | 33.48 |
| PGSC0003DMT400074529 | Potato | cytosol | 27.57 | 31.12 |
| CDY71678 | Canola | plastid | 15.44 | 31.11 |
| PGSC0003DMT400074528 | Potato | nucleus | 26.84 | 29.8 |
| PGSC0003DMT400016178 | Potato | cytosol | 27.57 | 29.76 |
| PGSC0003DMT400016177 | Potato | nucleus | 26.1 | 29.58 |
| PGSC0003DMT400074525 | Potato | cytosol | 26.1 | 29.1 |
| CDY17855 | Canola | nucleus | 25.74 | 28.93 |
| PGSC0003DMT400074527 | Potato | cytosol | 25.74 | 28.69 |
| Solyc01g073820.2.1 | Tomato | cytosol, extracellular, nucleus | 27.21 | 28.57 |
| Solyc01g073800.2.1 | Tomato | nucleus | 25.74 | 28.23 |
| PGSC0003DMT400074526 | Potato | nucleus | 27.57 | 28.2 |
| Solyc01g073810.2.1 | Tomato | nucleus | 25.74 | 28.11 |
| CDX95602 | Canola | nucleus | 25.0 | 28.1 |
| CDY30467 | Canola | nucleus | 25.0 | 27.87 |
| CDY23430 | Canola | nucleus | 25.37 | 27.82 |
| PGSC0003DMT400074531 | Potato | nucleus | 26.47 | 27.69 |
| PGSC0003DMT400074530 | Potato | cytosol, mitochondrion, nucleus | 26.1 | 27.52 |
| CDY30469 | Canola | mitochondrion, nucleus | 19.49 | 27.18 |
| PGSC0003DMT400016183 | Potato | nucleus | 28.68 | 27.18 |
| CDY30468 | Canola | nucleus | 24.63 | 27.13 |
| CDX67465 | Canola | cytosol | 23.16 | 27.04 |
| CDY67171 | Canola | cytosol | 23.16 | 27.04 |
| CDX83428 | Canola | nucleus | 23.9 | 26.97 |
| CDY23432 | Canola | mitochondrion, nucleus | 18.38 | 26.45 |
| CDY23431 | Canola | nucleus | 23.9 | 26.32 |
| CDY71677 | Canola | mitochondrion, nucleus | 18.01 | 25.93 |
| CDY22774 | Canola | mitochondrion | 15.44 | 24.28 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 27.57 | 24.19 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 14.34 | 21.31 |
| PGSC0003DMT400016188 | Potato | nucleus | 26.47 | 19.73 |
| PGSC0003DMT400016179 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 28.68 | 19.65 |
| PGSC0003DMT400074532 | Potato | nucleus | 28.31 | 19.59 |
| Solyc01g073780.2.1 | Tomato | nucleus | 27.94 | 19.14 |
| CDX79762 | Canola | nucleus, plastid | 14.34 | 19.02 |
| Solyc01g073840.1.1 | Tomato | nucleus | 28.31 | 16.78 |
| CDY42552 | Canola | mitochondrion | 13.97 | 16.74 |
| PGSC0003DMT400016187 | Potato | nucleus | 27.21 | 16.12 |
| CDY30470 | Canola | cytosol, plastid | 22.79 | 15.2 |
| CDY04505 | Canola | plastid | 26.47 | 10.81 |
| CDX71437 | Canola | plastid | 26.1 | 10.73 |
Protein Annotations
| MapMan:35.2 | GO:A0A078GBY9 | UniProt:A0A078GBY9 | EnsemblPlants:CDY22552 | ProteinID:CDY22552 | ProteinID:CDY22552.1 |
| ncoils:Coil | InterPro:DC1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | EnsemblPlantsGene:GSBRNA2T00019150001 | InterPro:IPR002219 |
| InterPro:PE/DAG-bd | PFAM:PF03107 | PFscan:PS50081 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF59 | SUPFAM:SSF57889 |
| UniParc:UPI0004EDBF88 | SEG:seg | : | : | : | : |
Description
BnaC03g23620DBnaC03g23620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBY9]
Coordinates
chrLK032132:+:576355..577173
Molecular Weight (calculated)
29499.9 Da
IEP (calculated)
6.079
GRAVY (calculated)
-0.068
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYKHFSHPH NLILQQLQTT TPSDSLVICS GCESSIYESA TAYICSTCDF KLHEQCGNAV RGIQHPSHSG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAQLPH VLVHDSHPLH SLLLVYNSTP PAMPFTQFGY VNQLVCNLCN VGMDGRFWSY NCYACNYHVH ASCAVNKTKP VAAASAVEKC
201: GTTSDEGGAV SGESVPAQGL ETEQTQQPAA TAEQVEDPAL RQQLELQRLQ LELDMSSALA NMIGSFNLSS LV
101: SYCCPLCDFD LHVQCAQLPH VLVHDSHPLH SLLLVYNSTP PAMPFTQFGY VNQLVCNLCN VGMDGRFWSY NCYACNYHVH ASCAVNKTKP VAAASAVEKC
201: GTTSDEGGAV SGESVPAQGL ETEQTQQPAA TAEQVEDPAL RQQLELQRLQ LELDMSSALA NMIGSFNLSS LV
001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
Arabidopsis Description
At2g42060 [Source:UniProtKB/TrEMBL;Acc:P93741]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.