Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83428 | Canola | nucleus | 89.67 | 90.04 |
| CDY71677 | Canola | mitochondrion, nucleus | 43.8 | 56.08 |
| CDY23432 | Canola | mitochondrion, nucleus | 43.8 | 56.08 |
| CDY22774 | Canola | mitochondrion | 40.08 | 56.07 |
| CDY30468 | Canola | nucleus | 57.02 | 55.87 |
| CDY23431 | Canola | nucleus | 56.2 | 55.06 |
| CDX67465 | Canola | cytosol | 52.48 | 54.51 |
| CDY30469 | Canola | mitochondrion, nucleus | 43.8 | 54.36 |
| CDY67171 | Canola | cytosol | 52.07 | 54.08 |
| CDY17855 | Canola | nucleus | 51.24 | 51.24 |
| CDY23430 | Canola | nucleus | 51.65 | 50.4 |
| CDY30467 | Canola | nucleus | 50.0 | 49.59 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 35.54 | 46.99 |
| CDX79762 | Canola | nucleus, plastid | 37.19 | 43.9 |
| CDY71678 | Canola | plastid | 19.01 | 34.07 |
| Solyc01g073850.1.1 | Tomato | cytosol | 15.29 | 33.33 |
| Solyc01g073860.2.1 | Tomato | cytosol | 32.23 | 33.05 |
| CDY42552 | Canola | mitochondrion | 30.17 | 32.16 |
| PGSC0003DMT400016180 | Potato | cytosol | 16.94 | 25.31 |
| CDY22552 | Canola | cytosol | 28.1 | 25.0 |
| CDY35387 | Canola | cytosol | 27.69 | 24.63 |
| CDY30470 | Canola | cytosol, plastid | 24.79 | 14.71 |
| CDY04505 | Canola | plastid | 26.03 | 9.46 |
| CDX71437 | Canola | plastid | 25.21 | 9.21 |
Protein Annotations
| EnsemblPlants:CDX95602 | EnsemblPlantsGene:GSBRNA2T00101472001 | GO:A0A078E3A6 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | ProteinID:CDX95602 | ProteinID:CDX95602.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI0004EED2C8 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g24830D
Coordinates
chrLK031890:-:196797..197525
Molecular Weight (calculated)
27438.4 Da
IEP (calculated)
6.931
GRAVY (calculated)
-0.557
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSKPVNRP SVKHPSHKHP LHIFKAQEED EIMCSGCELG LTGQAFKCTK SDCDYFLHKS CFDLPREINH KSHPDHPLTL LHSPPYGHAY GCDACGQYGS
101: SFTYHCSKCQ YDVHVGCAFL PETLDRDDHE HKLTLVYSSP CKGRDGVVFM CDVCKETVLS ENLWVYHCKV CDYGTHVHSC AVYENHEAKK GGGGEEEAVL
201: EALRIESLRN ARMELANMRI SNKINNSVIH FGDEPRYHWV RK
101: SFTYHCSKCQ YDVHVGCAFL PETLDRDDHE HKLTLVYSSP CKGRDGVVFM CDVCKETVLS ENLWVYHCKV CDYGTHVHSC AVYENHEAKK GGGGEEEAVL
201: EALRIESLRN ARMELANMRI SNKINNSVIH FGDEPRYHWV RK
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.