CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004826.1-P	Field mustard	nucleus	97.93	97.93
AT2G44370.1	Thale cress	mitochondrion	75.62	73.2
CDY23430	Canola	nucleus	72.31	70.56
CDY30467	Canola	nucleus	69.83	69.26
CDX67465	Canola	cytosol	61.98	64.38
CDY67171	Canola	cytosol	61.57	63.95
AT2G17740.1	Thale cress	cytosol, mitochondrion, nucleus	63.22	61.69
CDY22774	Canola	mitochondrion	38.02	53.18
CDY23431	Canola	nucleus	54.13	53.04
CDX83428	Canola	nucleus	51.24	51.45
CDX95602	Canola	nucleus	51.24	51.24
CDY30468	Canola	nucleus	52.07	51.01
CDY30469	Canola	mitochondrion, nucleus	39.67	49.23
CDY23432	Canola	mitochondrion, nucleus	38.43	49.21
CDY71677	Canola	mitochondrion, nucleus	38.43	49.21
CDY17853	Canola	mitochondrion, nucleus, plastid	28.93	38.25
CDX79762	Canola	nucleus, plastid	30.99	36.59
Solyc01g073860.2.1	Tomato	cytosol	33.88	34.75
CDY71678	Canola	plastid	18.59	33.33
Solyc01g073850.1.1	Tomato	cytosol	14.88	32.43
CDY42552	Canola	mitochondrion	28.1	29.96
PGSC0003DMT400016180	Potato	cytosol	19.83	29.63
CDY22552	Canola	cytosol	28.93	25.74
CDY35387	Canola	cytosol	28.1	25.0
CDY30470	Canola	cytosol, plastid	26.45	15.69
CDY04505	Canola	plastid	25.21	9.16
CDX71437	Canola	plastid	23.97	8.76

Protein Annotations

EnsemblPlants:CDY17855	EnsemblPlantsGene:GSBRNA2T00002189001	GO:A0A078FTJ4	GO:GO:0007275	GO:GO:0008150	GO:GO:0009561
GO:GO:0055046	InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871	PANTHER:PTHR13871:SF60	PFAM:PF03107
ProteinID:CDY17855	ProteinID:CDY17855.1	SEG:seg	SUPFAM:SSF57889	UniParc:UPI0004EF20AA	UniProt:A0A078FTJ4
MapMan:35.2	:	:	:	:	:

Description

BnaC04g03640DBnaC04g03640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTJ4]

Coordinates

chrLK032079:+:83940..84668

Molecular Weight (calculated)

26995.9 Da

IEP (calculated)

7.015

GRAVY (calculated)

-0.594

Length

242 amino acids

Sequence
(BLAST)

001: MASSKPAVRH PSHNHPLRSH KAQAEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRENCHKSHP EHPLTLLYSP TYESSSFACD ACGEYGSGFS
101: YNCSICKYDV HVGCVSMPET VEREGHAHPL TLLYRSPYQN GLIFNCDECH DNVPDNLWSY YCKKCDYGTH LHSCAVEEEP KRGGGGSGNT SRNSGGRSSA
201: ASDLSAMLKA QREMERMQIE LDMAMQSAKI AKKSRKHMLK MI

Best Arabidopsis Sequence Match ( AT2G44370.1 )
(BLAST)

001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI

Arabidopsis Description

At2g44370 [Source:UniProtKB/TrEMBL;Acc:O64871]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.