Factsheet for PGSC0003DMT400048642

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093177	Potato	cytosol	25.0	11.11
PGSC0003DMT400016174	Potato	nucleus	20.0	5.43
PGSC0003DMT400074526	Potato	nucleus	21.67	4.89
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	20.0	4.65
PGSC0003DMT400074529	Potato	cytosol	18.33	4.56
PGSC0003DMT400074525	Potato	cytosol	18.33	4.51
PGSC0003DMT400074527	Potato	cytosol	18.33	4.51
PGSC0003DMT400016178	Potato	cytosol	18.33	4.37
PGSC0003DMT400016180	Potato	cytosol	11.67	4.32
PGSC0003DMT400016177	Potato	nucleus	16.67	4.17
PGSC0003DMT400074528	Potato	nucleus	16.67	4.08
PGSC0003DMT400074531	Potato	nucleus	16.67	3.85
PGSC0003DMT400016188	Potato	nucleus	21.67	3.56
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	23.33	3.53
PGSC0003DMT400016183	Potato	nucleus	16.67	3.48
PGSC0003DMT400074532	Potato	nucleus	21.67	3.31
PGSC0003DMT400029742	Potato	cytosol	23.33	3.17
PGSC0003DMT400085165	Potato	extracellular	18.33	3.01
PGSC0003DMT400083994	Potato	nucleus	16.67	2.83
PGSC0003DMT400069576	Potato	cytosol	16.67	2.7
PGSC0003DMT400016143	Potato	nucleus	16.67	2.63
PGSC0003DMT400094028	Potato	plasma membrane	21.67	2.43
PGSC0003DMT400027065	Potato	nucleus	16.67	2.17
PGSC0003DMT400016187	Potato	nucleus	15.0	1.96
Bra012008.1-P	Field mustard	nucleus	1.67	0.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400048642

EnsemblPlantsGene:PGSC0003DMG400018897

PGSC:PGSC0003DMG400018897

UniParc:UPI000295CBFC

UniProt:M1BMQ3

MapMan:35.2

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018897]

Coordinates

chr12:+:10556821..10557182

Molecular Weight (calculated)

6847.1 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.535

Length

60 amino acids

Sequence
(BLAST)

1: MNRQCAGAPK TLTRVDNVSY ELFFEFPFKN ENAEIKCNIC SKKVGTKGGL LYYNLEHDEA

Best Arabidopsis Sequence Match ( AT3G46810.1 )
(BLAST)

001: MEKVVLRVHD HPLLPFERFY FGRCSGCSRE GYFYGGYRCN ELACFAVFHK ECAESKPEIS HHAHPKHLLK LGNRRQRCHL CERPVGIGYF CSICDFGMHL
101: VCAKSPPLSL QPQLSSIENY KVHEHPLKPF KTAWLAETGN CKGCNYIIGN GDSAPFYECR RCKLYIHVTC LELFFTTDAR HNSHLKHPLK YLKNGPPSYA
201: DHKCLLCGRE FEDQQGQKYE LYHCDVCNFS ICISCQGNPP PLVVVTPKTH EHQLHLIPRL LDFTCNACGT QGDRSPYFCL QCNFMIHRGC IDLPRIININ
301: RHDHRISYIC HLGQGNLKCG VCRKTVDGFY GAYSCSKCSS YVVHSLCATR KDVWDMVELE GTPEEEEIAP FEVVDENTIK HMSHDHDLIF NNDGINLHES
401: KLCEACVSQI NTDPFYSCEL CGFILHQTCA NMPRKKRHVL CNIPFSLQTD DSKDSSRLRR KCSLCLQHFT GFAYNLHIAY NSRTEVMDIR CGSIFEPFVH
501: ERHPHPLYYK FFTFSAVAKC DICHITRRHL LCCEECDFRL DFRCATLPKK VMKQRYDDHP LFLSYGENNV DGEYWCDVCE KRVDAKTWFY TCDACGVTLH
601: VSCVVGDFSY HMPGPLSTVV SEYKMVPPAV VSLYKVVPNT SICRPLCSRC HTRCKLPCIL ETSEDGVNVY FCSNDCHKNP WESSYY

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9STF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.