Factsheet for PGSC0003DMT400027065

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068680.1.1	Tomato	nucleus	87.64	87.64
PGSC0003DMT400016174	Potato	nucleus	12.36	25.79
PGSC0003DMT400016177	Potato	nucleus	13.23	25.42
PGSC0003DMT400074529	Potato	cytosol	13.23	25.31
PGSC0003DMT400074528	Potato	nucleus	13.23	24.9
PGSC0003DMT400016180	Potato	cytosol	8.68	24.69
PGSC0003DMT400074527	Potato	cytosol	12.8	24.18
PGSC0003DMT400074525	Potato	cytosol	12.8	24.18
PGSC0003DMT400016178	Potato	cytosol	12.8	23.41
PGSC0003DMT400074526	Potato	nucleus	13.45	23.31
PGSC0003DMT400029742	Potato	cytosol	22.13	23.13
PGSC0003DMT400074531	Potato	nucleus	13.02	23.08
PGSC0003DMT400094028	Potato	plasma membrane	25.81	22.2
PGSC0003DMT400074530	Potato	cytosol, mitochondrion, nucleus	12.36	22.09
PGSC0003DMT400016183	Potato	nucleus	13.23	21.25
PGSC0003DMT400016187	Potato	nucleus	19.96	20.04
PGSC0003DMT400016179	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	17.14	19.9
PGSC0003DMT400016188	Potato	nucleus	14.75	18.63
PGSC0003DMT400093177	Potato	cytosol	5.21	17.78
PGSC0003DMT400083994	Potato	nucleus	13.45	17.56
PGSC0003DMT400069576	Potato	cytosol	13.88	17.3
PGSC0003DMT400048642	Potato	cytosol	2.17	16.67
PGSC0003DMT400074532	Potato	nucleus	14.1	16.54
PGSC0003DMT400016143	Potato	nucleus	12.36	15.0
PGSC0003DMT400085165	Potato	extracellular	8.46	10.66

Protein Annotations

EntrezGene:102593110	MapMan:35.2	InterPro:DC1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0035556	GO:GO:0046872	InterPro:IPR002219	UniProt:M1AP38	InterPro:PE/DAG-bd	PFAM:PF03107
EnsemblPlantsGene:PGSC0003DMG400010439	PGSC:PGSC0003DMG400010439	EnsemblPlants:PGSC0003DMT400027065	PFscan:PS50081	PANTHER:PTHR13871	PANTHER:PTHR13871:SF83
SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI000295AD3F	RefSeq:XP_006365047.1	InterPro:Znf_PHD	SEG:seg

Description

CHP-rich zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010439]

Coordinates

chr2:+:27540399..27542051

Molecular Weight (calculated)

53159.0 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.524

Length

461 amino acids

Sequence
(BLAST)

001: MDSHMKIKNL EKNEFISLRD HPFPCRFRYV SEVSIQQSSI KNHQSNYSSN NSTIDEIQQV GNNERKHFSH RHNLLTYSLR ASDSVHCNFC ETTISGMSYG
101: CKRCRYFLHE SCFEFPQVIE HLAHPGHQLI LKYSSNDQFN CKACHVGDNP ALLFNFHYSC DHCDFSLHMG CASMSYKVLH KEMTLSVFYS NPLRNEAGPL
201: LCDICNHSIE KSSGWVYYDY GHNFVTHFGC VADCVYGKGG NDKDYIIGVK NGLINLDGDD TSIVNYQKND DEGMKYKRFF HRHVLQQLDR SMDNSVKNRK
301: CGICGMDVSS DKKKGCSSCD FIIHERCSFL PEKIQHPFHP HPLTLVPKKD GVEVQCVGCR QSSGCHTNYT VLYQCKICEY QLHPSCAACP RRLKKLDLTL
401: CYSFPYKNEV SKLYCNYCSK VINKDEWLYY GRSNDEKRHI TCQLAVGISN CYVTLRDLEV E

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.