Factsheet for Solyc02g068680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027065	Potato	nucleus	87.64	87.64
Solyc01g073850.1.1	Tomato	cytosol	7.16	29.73
Solyc01g073880.2.1	Tomato	cytosol	12.15	29.02
Solyc01g073810.2.1	Tomato	nucleus	13.45	24.9
Solyc01g073860.2.1	Tomato	cytosol	12.58	24.58
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	13.23	23.55
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	26.9	23.26
Solyc01g073800.2.1	Tomato	nucleus	12.36	22.98
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	15.18	22.58
Solyc01g073840.1.1	Tomato	nucleus	19.52	19.61
Solyc03g097960.1.1	Tomato	cytosol	13.67	17.85
Solyc12g038680.1.1	Tomato	nucleus	8.03	17.13
Solyc01g073780.2.1	Tomato	nucleus	14.75	17.13
Solyc06g072460.1.1	Tomato	cytosol	13.67	17.03
Solyc01g073890.2.1	Tomato	cytosol	13.02	15.75

Protein Annotations

MapMan:35.2	ncoils:Coil	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0035556	GO:GO:0046872	GO:GO:0098869
InterPro:IPR002219	UniProt:K4B7K0	InterPro:PE/DAG-bd	PFAM:PF03107	PFscan:PS50081	PANTHER:PTHR13871
PANTHER:PTHR13871:SF83	SMART:SM00249	SUPFAM:SSF57889	EnsemblPlantsGene:Solyc02g068680.1	EnsemblPlants:Solyc02g068680.1.1	UniParc:UPI0002767B09
InterPro:Znf_PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38624575..38625960

Molecular Weight (calculated)

53238.0 Da

IEP (calculated)

7.489

GRAVY (calculated)

-0.540

Length

461 amino acids

Sequence
(BLAST)

001: MDSHLKIKNE FISLRDHPFP CRFRYVSEES IQQSSSIKTH QSNYSSTIDE IQRVGNNERK HFSHRHNLLT YSLRASDSVH CNFCETIISG MSYGCKRCRY
101: FLHESCFEFP QVIEHLAHPE HQLTLKYGND DQFNCNACHV GDNPALLFNF HYSCDHCDFS LHMGCASMPY KALHKEMALS VFYSNPLRNE AGPLLCDICD
201: HSIEKQSGWI YYNYGHNFLS HFGCVADIVY EKGGDDKDYI IGVKRGLINV DGDDTSIVNY RDNDEGIVKH KRFFHRHVLQ QLDRSMDNNN NNNNSVKNRK
301: CGICGMDISS DKKKGCSSCD FIIHERCSFL PEKIQHPFHP HPLSLVPKKD GVEVHCVGCR QSSGCHTNYT VLYRCKICEF QLHPSCAASP RRLKKLDLTL
401: CYSFPYKNEV SKLYCNYCSK VISKDEWLYY GRSSDEKRHI TCQLAVGISN CYVTLRDLEV E

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.