Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073880.2.1 | Tomato | cytosol | 21.3 | 23.83 |
| Solyc01g073860.2.1 | Tomato | cytosol | 20.83 | 19.07 |
| Solyc01g073850.1.1 | Tomato | cytosol | 9.26 | 18.02 |
| Solyc01g073810.2.1 | Tomato | nucleus | 17.59 | 15.26 |
| Solyc01g073820.2.1 | Tomato | cytosol, extracellular, nucleus | 17.59 | 14.67 |
| Solyc01g073800.2.1 | Tomato | nucleus | 16.67 | 14.52 |
| Solyc06g072460.1.1 | Tomato | cytosol | 23.61 | 13.78 |
| Solyc03g097960.1.1 | Tomato | cytosol | 22.22 | 13.6 |
| Solyc01g073890.2.1 | Tomato | cytosol | 22.22 | 12.6 |
| Solyc01g073830.1.1 | Tomato | cytosol, nucleus, peroxisome | 17.13 | 11.94 |
| Solyc01g073780.2.1 | Tomato | nucleus | 18.98 | 10.33 |
| Solyc01g073840.1.1 | Tomato | nucleus | 18.98 | 8.93 |
| Solyc08g014370.1.1 | Tomato | nucleus, plasma membrane, plastid | 20.83 | 8.44 |
| Solyc02g068680.1.1 | Tomato | nucleus | 17.13 | 8.03 |
Protein Annotations
| EnsemblPlants:Solyc12g038680.1.1 | EnsemblPlantsGene:Solyc12g038680.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0098869 |
| InterPro:DC1 | ncoils:Coil | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF83 | PFAM:PF03107 | SEG:seg |
| SUPFAM:SSF57889 | UniParc:UPI000276A4E1 | UniProt:K4DEL7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:-:47165324..47165974
Molecular Weight (calculated)
24741.6 Da
IEP (calculated)
8.536
GRAVY (calculated)
-0.576
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHFSHPHDL RTIEVPSENL TKSKTCFGCN LPLFGSCYTC SSCNFYLHKS CSNLPQSTLN KFHEKHPLRL LYPPNCTTAP CHLCGTSCSP TFTYNCSLCN
101: FNIHANCAHL YETKSRDDNE HYVLSFFKKK LNELKTAKSE IDSAKTLINS LKDEMSGQAK LVRQKKEAAV LQQQENEMIL QQRRNNLLLQ CMKNSSDSID
201: FMGQIGTSSN YKIYRY
101: FNIHANCAHL YETKSRDDNE HYVLSFFKKK LNELKTAKSE IDSAKTLINS LKDEMSGQAK LVRQKKEAAV LQQQENEMIL QQRRNNLLLQ CMKNSSDSID
201: FMGQIGTSSN YKIYRY
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.