Factsheet for Solyc08g014370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094028	Potato	plasma membrane	88.18	87.69
Solyc01g073880.2.1	Tomato	cytosol	10.88	30.05
Solyc01g073850.1.1	Tomato	cytosol	6.19	29.73
Solyc02g068680.1.1	Tomato	nucleus	23.26	26.9
Solyc01g073810.2.1	Tomato	nucleus	12.38	26.51
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	12.38	25.48
Solyc01g073800.2.1	Tomato	nucleus	11.44	24.6
Solyc01g073860.2.1	Tomato	cytosol	10.32	23.31
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	12.38	21.29
Solyc12g038680.1.1	Tomato	nucleus	8.44	20.83
Solyc01g073840.1.1	Tomato	nucleus	16.14	18.74
Solyc01g073780.2.1	Tomato	nucleus	13.13	17.63
Solyc01g073890.2.1	Tomato	cytosol	11.07	15.49
Solyc03g097960.1.1	Tomato	cytosol	9.94	15.01
Solyc06g072460.1.1	Tomato	cytosol	9.76	14.05

Protein Annotations

MapMan:35.2	ncoils:Coil	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	GO:GO:0098869	UniProt:K4CJ70
PFAM:PF03107	PANTHER:PTHR13871	PANTHER:PTHR13871:SF83	SMART:SM00249	SUPFAM:SSF57889	EnsemblPlantsGene:Solyc08g014370.1
EnsemblPlants:Solyc08g014370.1.1	TMHMM:TMhelix	UniParc:UPI000276B298	InterPro:Znf_PHD	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:4293649..4295250

Molecular Weight (calculated)

61627.3 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.275

Length

533 amino acids

Sequence
(BLAST)

001: MPDDKKMLCL QFDDNNLEFS YLLGLSILLP TIVLVYCLLK FLLQLLIHHP QNMSQPKKRE TEIVTNEKSD AEDQLDEAKG QQAVLYRFRQ RHKKIQRETT
101: SCSKLIAKEE ESCVSKTPPR VRDGDLLHFS HRHPLLRFHL KGTEVIRCNM CAITISGVAY GCDCCRYFLH EVCSNIPKRI RHDFHPMHSL TLLPIPSIAL
201: WHSKVETEFC CVACGYDSSL FSFYYHCDLC KFDLHLECAS VMTRLIRKVK YPLDLFTSFP LKSEGAAVLC SICNQVMNRQ SAWLFYNREF DYICHFECAA
301: EEELGVIGDQ SFLSEVQKSL LLRKSLPDQQ QKLEKLGEVI HFSHRHPLKA IKQTNETPIR SCCICSNQDL SGYICQLCNY FIDESCFPLP RRIQHHFHPN
401: HPLILATYND QPKSKCRACG HENGATYCCF TCKFSLHRSC AGAPMTFTLG TNKKVSYKLL YSYPYDGEMA VIKCNICSNE FNSKESFMYY NFDLDEVLHV
501: QCALNKETDS YDTKFVLASE RLKSIQIEED HSK

Best Arabidopsis Sequence Match ( AT2G44380.1 )
(BLAST)

001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY

Arabidopsis Description

At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.