Factsheet for Solyc06g072460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069576	Potato	cytosol	94.59	94.59
Solyc03g097960.1.1	Tomato	cytosol	55.95	58.64
Solyc01g073880.2.1	Tomato	cytosol	17.3	33.16
Solyc01g073850.1.1	Tomato	cytosol	9.73	32.43
Solyc01g073860.2.1	Tomato	cytosol	17.3	27.12
Solyc01g073890.2.1	Tomato	cytosol	27.3	26.51
VIT_08s0007g06630.t01	Wine grape	cytosol	19.46	26.28
Solyc01g073820.2.1	Tomato	cytosol, extracellular, nucleus	17.84	25.48
Solyc01g073800.2.1	Tomato	nucleus	17.03	25.4
Solyc01g073810.2.1	Tomato	nucleus	16.22	24.1
Solyc12g038680.1.1	Tomato	nucleus	13.78	23.61
Solyc01g073830.1.1	Tomato	cytosol, nucleus, peroxisome	17.57	20.97
CDX71437	Canola	plastid	30.81	17.22
CDY04505	Canola	plastid	30.0	16.67
AT2G27660.1	Thale cress	plastid	31.35	16.16
Solyc01g073780.2.1	Tomato	nucleus	17.3	16.12
Solyc01g073840.1.1	Tomato	nucleus	18.11	14.6
Solyc02g068680.1.1	Tomato	nucleus	17.03	13.67
Solyc08g014370.1.1	Tomato	nucleus, plasma membrane, plastid	14.05	9.76

Protein Annotations

EnsemblPlants:Solyc06g072460.1.1	EnsemblPlantsGene:Solyc06g072460.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869
InterPro:DC1	PANTHER:PTHR13871	PANTHER:PTHR13871:SF83	PFAM:PF03107	SEG:seg	SUPFAM:SSF57889
UniParc:UPI000276579D	UniProt:K4C8W6	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:+:44695610..44696722

Molecular Weight (calculated)

40428.7 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.451

Length

370 amino acids

Sequence
(BLAST)

001: MGRVKLNNDQ TSSLKHFSHP HELELCTQLQ DLSPCSGCRL PPSGQMYICR PCNFTLHLSC AKFPQLITHP SHPNHSLNLL PTSKYPGGQF NCDACKRHGT
101: GFSYHCSYCE FDLHVICASK PLKITHELHQ CSLELTFKNP YANAKGFSCD VCRKIGVKQW LYRCPACEFD VHLDCLASAP RQEASQSTAL QHHHSFPGAT
201: NQFQQAIMGT QARSHHFMHA ASTGAITNNH SLQPTVFQGQ ARPNQLFHSA STSAVPQQQF LQPPKIQGQA RPNQLFHSAS TSAVPQQQFL QPTMIQGQVR
301: PNQYMQTPGS NSGLGNNLMN AAIQGLVEGA AQQVGQTFMQ GIIGGGDNNG GNEGSSILGG IFGDSSDTQY

Best Arabidopsis Sequence Match ( AT2G27660.1 )
(BLAST)

001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.