Factsheet for PGSC0003DMT400046236

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013447
PGSC0003DMT400016180
PGSC0003DMT400046236
PGSC0003DMT400061575
PGSC0003DMT400070920

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	PGSC0003DMT400061575	AT3G54290.1	21798944
AT5G23310.1	PGSC0003DMT400046236	AT5G23310.1	18996978
AT5G23310.1	PGSC0003DMT400016180	AT5G40590.1	21798944
AT5G23310.1	PGSC0003DMT400013447	AT5G51100.1	18996978
AT5G23310.1	PGSC0003DMT400070920	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021140.2.1	Tomato	nucleus	83.33	85.32
GSMUA_Achr10P...	Banana	vacuole	57.75	66.22
CDX87176	Canola	plastid	63.95	63.46
AT5G23310.1	Thale cress	plastid	64.34	63.12
Bra026503.1-P	Field mustard	plastid	63.95	62.74
CDY16845	Canola	plastid	63.95	62.74
GSMUA_Achr10P...	Banana	mitochondrion	57.36	62.18
CDX88013	Canola	plastid	63.57	62.12
Bra009670.1-P	Field mustard	plastid	63.18	61.98
CDY45763	Canola	plastid	62.79	61.6
Os06t0143000-01	Rice	plastid	56.2	56.86
KRG89844	Soybean	nucleus	65.89	55.74
KXG19271	Sorghum	plastid	56.2	55.56
VIT_10s0042g00100.t01	Wine grape	mitochondrion	68.22	54.83
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	53.88	53.46
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	53.88	53.26
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	53.49	53.08
Zm00001d045384_P003	Maize	mitochondrion	40.31	51.74
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	37.21	51.61
Zm00001d014632_P001	Maize	mitochondrion	30.23	50.65
Zm00001d036135_P003	Maize	mitochondrion, plastid	50.78	46.13
PGSC0003DMT400070920	Potato	extracellular, plastid	43.02	44.05
HORVU7Hr1G020590.12	Barley	cytosol, plastid	54.65	41.59
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	44.19	37.62
PGSC0003DMT400042937	Potato	mitochondrion	27.13	30.7

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:102589895	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036314	InterPro:IPR036324	UniProt:M1BIU0	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	EnsemblPlantsGene:PGSC0003DMG400017948	PGSC:PGSC0003DMG400017948
EnsemblPlants:PGSC0003DMT400046236	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI000294A485	RefSeq:XP_006350369.1	SEG:seg

Description

Superoxide dismutase [Source:PGSC_GENE;Acc:PGSC0003DMG400017948]

Coordinates

chr2:+:7406265..7409582

Molecular Weight (calculated)

29560.3 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.251

Length

258 amino acids

Sequence
(BLAST)

001: MSWCCCNRLS TSSSSVTSDL WRQFNVPCRI SNVGLRQKRS VSAYYGLKTP PYKLDALEPY MSQSMVEIHW GDHHRGYVES LNKQIEKNDI FYGCTMDELI
101: KLTYNNGNPL PEFSDAAQVW NHDFFWESMQ PGGGDIPKLG LLQQIDKDFG SFTIFKDKFI EAALTLFGSG WIWLVLSREE KRLAIIKTSN AVNPLVWNDI
201: PLIGLDLWEH AYYLDYKNDK ANYVNVFMNH LVSWDAALGR MARAQAFVNL GEPKIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.