Factsheet for PGSC0003DMT400042937

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	90.35	90.35
CDY36283	Canola	cytosol	64.47	81.67
Bra029879.1-P	Field mustard	mitochondrion	78.95	77.92
CDY08564	Canola	mitochondrion	78.95	77.92
CDY08566	Canola	mitochondrion	78.95	77.92
Bra034154.1-P	Field mustard	mitochondrion	77.63	76.62
CDY00976	Canola	mitochondrion	76.32	75.32
KRH53764	Soybean	mitochondrion	79.39	75.1
AT3G10920.1	Thale cress	mitochondrion	75.88	74.89
Os05t0323900-01	Rice	mitochondrion	75.44	74.46
KRH64185	Soybean	mitochondrion	78.07	74.17
TraesCS2B01G567600.1	Wheat	mitochondrion	71.49	72.44
TraesCS2D01G538300.1	Wheat	mitochondrion	72.81	71.86
TraesCS2A01G537100.1	Wheat	mitochondrion	72.81	71.86
EES17972	Sorghum	mitochondrion	72.81	71.24
Zm00001d037859_P002	Maize	mitochondrion	72.81	70.64
GSMUA_Achr3P09840_001	Banana	mitochondrion	73.25	69.29
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	74.12	68.98
GSMUA_Achr8P21350_001	Banana	mitochondrion	71.93	68.91
Zm00001d009990_P001	Maize	mitochondrion	73.25	68.72
GSMUA_Achr3P18000_001	Banana	mitochondrion	68.86	64.61
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	70.18	63.24
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	73.68	59.36
PGSC0003DMT400070920	Potato	extracellular, plastid	36.4	32.94
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	36.84	27.72
PGSC0003DMT400046236	Potato	plastid	30.7	27.13

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	EntrezGene:102584005	Gene3D:2.40.500.20	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0016491
GO:GO:0019430	GO:GO:0042742	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324
UniProt:M1BDU1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	EnsemblPlantsGene:PGSC0003DMG400016647	PGSC:PGSC0003DMG400016647	EnsemblPlants:PGSC0003DMT400042937	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI00029546ED	RefSeq:XP_006358755.1	:	:	:

Description

Superoxide dismutase [Mn], mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400016647]

Coordinates

chr6:-:33726748..33729774

Molecular Weight (calculated)

25333.2 Da

IEP (calculated)

7.839

GRAVY (calculated)

-0.313

Length

228 amino acids

Sequence
(BLAST)

001: MALRTLVSRR TLAAGLGFRQ QLRGVQTFSL PDLPYDYGAL EPAISGDIMQ LHHQKHHQTY ITNYNKALEQ LHDAISKGDA PTVAKLHSAI KFNGGGHINH
101: SIFWNNLAPV SEGGGEPPKG SLGWAIDTNF GSLEALVKKM NAEGAALQGS GWVWLGVDKE LKRLVVETTA NQDPLVSKGA NLVPLLGIDV WEHAYYLQYK
201: NVRPDYLKNI WKVITWKYAN DVYENECP

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.