Factsheet for Zm00001d037859_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

mitochondrion: 14690504
extracellular: 20408568
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17972	Sorghum	mitochondrion	93.19	93.99
Zm00001d038235_P001	Maize	cytosol	5.96	93.33
Zm00001d009990_P001	Maize	mitochondrion	92.77	89.71
Os05t0323900-01	Rice	mitochondrion	87.66	89.18
TraesCS2A01G537100.1	Wheat	mitochondrion	85.11	86.58
TraesCS2D01G538300.1	Wheat	mitochondrion	83.83	85.28
TraesCS2B01G567600.1	Wheat	mitochondrion	81.28	84.89
CDY36283	Canola	cytosol	61.28	80.0
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	71.91	74.12
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	79.57	73.91
AT3G10920.1	Thale cress	mitochondrion	72.34	73.59
GSMUA_Achr3P09840_001	Banana	mitochondrion	74.89	73.03
KRH64185	Soybean	mitochondrion	74.47	72.92
PGSC0003DMT400042937	Potato	mitochondrion	70.64	72.81
Bra034154.1-P	Field mustard	mitochondrion	71.49	72.73
Bra029879.1-P	Field mustard	mitochondrion	71.06	72.29
GSMUA_Achr8P21350_001	Banana	mitochondrion	73.19	72.27
CDY08566	Canola	mitochondrion	70.64	71.86
CDY08564	Canola	mitochondrion	70.64	71.86
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	74.89	71.84
CDY00976	Canola	mitochondrion	70.21	71.43
KRH53764	Soybean	mitochondrion	72.77	70.95
GSMUA_Achr3P18000_001	Banana	mitochondrion	72.34	69.96
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	67.23	55.83
Zm00001d045384_P003	Maize	mitochondrion	24.26	28.36
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	18.3	23.12
Zm00001d036135_P003	Maize	mitochondrion, plastid	25.53	21.13
Zm00001d014632_P001	Maize	mitochondrion	13.19	20.13
Zm00001d045538_P001	Maize	plastid	29.36	17.88

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	EntrezGene:542764	ProteinID:AQK85008.1	UniProt:B4F925
EMBL:BT033613	GO:GO:0000302	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006801	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009410	GO:GO:0009635	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0019430
GO:GO:0030145	GO:GO:0046872	GO:GO:0051289	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI00017B61F5	EnsemblPlantsGene:Zm00001d037859	EnsemblPlants:Zm00001d037859_P002
EnsemblPlants:Zm00001d037859_T002	SEG:seg	:	:	:	:

Description

superoxide dismutase3Superoxide dismutase

Coordinates

chr6:+:140001946..140006130

Molecular Weight (calculated)

25588.6 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.146

Length

235 amino acids

Sequence
(BLAST)

001: MALRTLASKK VLSFPFGGAG RPLAAAASAR GVTTVTLPDL SYDFIALEPA ISGEIMRLHH QKHHATYVAN YNKALEQLDT AVSKGDASAV VQLQGAIKFN
101: GGGHVNHSIF WKNLKPISEG GGEPPHGKLG WAIDEDFGSF EALVKKMNAE GAALQGSGWV WLALDKEAKK LSVETTANQD PLVTKGASLV PLLGIDVWEH
201: AYYLQYKNVR PDYLNNIWKV MNWKYAGEVY ENVLA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.