Factsheet for Solyc06g049080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042937	Potato	mitochondrion	90.35	90.35
CDY36283	Canola	cytosol	64.04	81.11
CDY00976	Canola	mitochondrion	78.07	77.06
KRH64185	Soybean	mitochondrion	78.95	75.0
Bra029879.1-P	Field mustard	mitochondrion	75.88	74.89
Bra034154.1-P	Field mustard	mitochondrion	75.88	74.89
CDY08564	Canola	mitochondrion	75.88	74.89
CDY08566	Canola	mitochondrion	75.88	74.89
Os05t0323900-01	Rice	mitochondrion	75.88	74.89
AT3G10920.1	Thale cress	mitochondrion	75.88	74.89
KRH53764	Soybean	mitochondrion	78.51	74.27
TraesCS2B01G567600.1	Wheat	mitochondrion	71.93	72.89
TraesCS2D01G538300.1	Wheat	mitochondrion	73.68	72.73
TraesCS2A01G537100.1	Wheat	mitochondrion	73.25	72.29
EES17972	Sorghum	mitochondrion	73.68	72.1
Zm00001d037859_P002	Maize	mitochondrion	74.12	71.91
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	76.75	71.43
GSMUA_Achr8P21350_001	Banana	mitochondrion	74.12	71.01
GSMUA_Achr3P09840_001	Banana	mitochondrion	75.0	70.95
Zm00001d009990_P001	Maize	mitochondrion	73.68	69.14
GSMUA_Achr3P18000_001	Banana	mitochondrion	71.05	66.67
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	69.3	62.45
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	75.0	60.42
Solyc06g048410.2.1	Tomato	plastid	35.09	32.13
Solyc06g048420.1.1	Tomato	cytosol	21.93	31.25
Solyc03g095180.2.1	Tomato	plastid	36.4	27.39
Solyc02g021140.2.1	Tomato	nucleus	30.26	27.38

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0016491	GO:GO:0019430
GO:GO:0042742	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	UniProt:K4C5F4
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	EnsemblPlantsGene:Solyc06g049080.2	EnsemblPlants:Solyc06g049080.2.1	UniParc:UPI0002766926

Description

Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:K4C5F4]

Coordinates

chr6:+:32362797..32365692

Molecular Weight (calculated)

25316.2 Da

IEP (calculated)

7.839

GRAVY (calculated)

-0.318

Length

228 amino acids

Sequence
(BLAST)

001: MALRTLVSRR TLAAGLGFRQ QLRGVQTFSL PDLPYDYGAL EPAISGDIMQ LHHQKHHQTY ITNYNKALEQ LHDAISKGDA PAVAKLHSAL KFNGGGHINH
101: SIFWNNLAPV SEGGGEPPKG SLGWAIDTNF GSLEALVKKM NAEGAALQGS GWVWLGVDKE LKRLVVETTA NQDPLVSKGA NLVPLLGIDV WEHAYYLQYK
201: NVRPDYLKNI WKVINWKYAN DVYENECP

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.