Factsheet for Solyc06g048420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005670.2.1
Solyc02g021140.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc05g007420.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT5G51100.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc01g005670.2.1	AT4G10800.1	21798944
AT5G51100.1	Solyc02g021140.2.1	AT5G23310.1	18996978
AT5G51100.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048410.2.1	Tomato	plastid	84.38	54.22
PGSC0003DMT400070920	Potato	extracellular, plastid	84.38	53.57
AT4G25100.2	Thale cress	plastid	65.0	49.06
Bra013863.1-P	Field mustard	cytosol	65.0	49.06
CDY34342	Canola	cytosol	65.0	48.83
CDY11055	Canola	cytosol	65.62	48.61
CDY03380	Canola	cytosol	63.12	48.56
CDX92676	Canola	cytosol	64.38	47.69
KRH34597	Soybean	cytosol, nucleus	63.75	41.8
KRG92190	Soybean	cytosol	63.75	41.13
Solyc03g095180.2.1	Tomato	plastid	74.38	39.27
VIT_16s0013g00260.t01	Wine grape	plastid	68.75	35.95
Bra029190.1-P	Field mustard	mitochondrion	60.62	35.93
CDY38848	Canola	plastid	61.88	33.11
CDY32644	Canola	plastid	61.25	32.67
KRH33343	Soybean	plastid	63.12	32.58
KRH70390	Soybean	plastid	63.12	32.17
AT5G51100.1	Thale cress	plastid	58.75	30.82
Solyc02g021140.2.1	Tomato	nucleus	45.62	28.97
GSMUA_Achr11P...	Banana	plastid	51.25	27.24
CDY05836	Canola	cytosol	36.25	26.85
Bra035724.1-P	Field mustard	cytosol	33.12	23.98
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	31.25	21.93
Zm00001d045538_P001	Maize	plastid	46.88	19.43
Os06t0115400-01	Rice	plastid	46.88	19.18
KXG19156	Sorghum	plastid	46.25	18.88
TraesCS7D01G043000.1	Wheat	plastid	46.25	18.88
TraesCS7A01G048600.1	Wheat	mitochondrion	45.62	18.58
TraesCS4A01G434000.1	Wheat	plastid	45.0	18.41
HORVU7Hr1G008390.6	Barley	plastid	46.25	17.96
CDY70727	Canola	mitochondrion	17.5	10.04

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324
UniProt:K4C589	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777
PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	EnsemblPlantsGene:Solyc06g048420.1
EnsemblPlants:Solyc06g048420.1.1	UniParc:UPI0002766544	:	:	:	:

Description

Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:K4C589]

Coordinates

chr6:+:31029698..31030886

Molecular Weight (calculated)

17942.2 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.461

Length

160 amino acids

Sequence
(BLAST)

001: MANFGKHHRS YDDNLNKKIH GTELHGKTLQ DLILVTYNNG SLLPAFNNDA QMKPNGGRES SGELLQLINR DFGSYDTFVK EFKAAAATQF GSGWSWLAYK
101: PEDKKLALVK TPNAENPLVL GYTDAYYLDF QNCPPDYISL FMEKLISWEA VSSRLKAATA

Best Arabidopsis Sequence Match ( AT5G51100.5 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSHAYYLDFE NRRAEYINTF MEKLVSWETV STRLESAIAR AVQREQEGTE TEDEENPDDE VPEVYLDSDI DVSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.