CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 6
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 18757068
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 18757068 doi

NW Oehrle, AD Sarma, JK Waters, DW Emerich

United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89844
KRG99108
KRH16959
KRH45889
KRH53667
KRH56238
KRH62719
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	KRG99108	AT1G69690.1	21798944
AT5G51100.1	KRH45889	AT1G69690.1	21798944
AT5G51100.1	KRH16959	AT3G49580.1	21798944
AT5G51100.1	KRH53667	AT3G49580.1	21798944
AT5G51100.1	KRH64261	AT3G49580.1	21798944
AT5G51100.1	KRH56238	AT4G10800.1	21798944
AT5G51100.1	KRH62719	AT4G10800.1	21798944
AT5G51100.1	KRG89844	AT5G23310.1	18996978
AT5G51100.1	KRH16959	AT5G24660.1	21798944
AT5G51100.1	KRH53667	AT5G24660.1	21798944
AT5G51100.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92190	Soybean	cytosol	90.57	89.11
Bra013863.1-P	Field mustard	cytosol	63.52	73.11
CDY03380	Canola	cytosol	62.3	73.08
CDY34342	Canola	cytosol	63.52	72.77
AT4G25100.2	Thale cress	plastid	61.89	71.23
CDX92676	Canola	cytosol	62.3	70.37
CDY11055	Canola	cytosol	62.3	70.37
Solyc06g048420.1.1	Tomato	cytosol	41.8	63.75
Solyc06g048410.2.1	Tomato	plastid	64.34	63.05
PGSC0003DMT400070920	Potato	extracellular, plastid	63.52	61.51
KRH70390	Soybean	plastid	74.59	57.96
KRH33343	Soybean	plastid	71.72	56.45
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	69.67	56.11
Bra029190.1-P	Field mustard	mitochondrion	61.48	55.56
Solyc03g095180.2.1	Tomato	plastid	68.85	55.45
VIT_16s0013g00260.t01	Wine grape	plastid	68.85	54.9
AT5G51100.1	Thale cress	plastid	63.93	51.15
CDY38848	Canola	plastid	61.48	50.17
CDY32644	Canola	plastid	61.48	50.0
GSMUA_Achr11P...	Banana	plastid	58.61	47.51
CDY05836	Canola	cytosol	31.97	36.11
KRG89844	Soybean	nucleus	42.62	34.1
Bra035724.1-P	Field mustard	cytosol	28.28	31.22
KRH53764	Soybean	mitochondrion	30.74	31.12
KRH64185	Soybean	mitochondrion	30.33	30.83
Zm00001d045538_P001	Maize	plastid	47.13	29.79
Os06t0115400-01	Rice	plastid	46.72	29.16
TraesCS7D01G043000.1	Wheat	plastid	46.31	28.83
KXG19156	Sorghum	plastid	45.49	28.32
TraesCS7A01G048600.1	Wheat	mitochondrion	45.49	28.24
TraesCS4A01G434000.1	Wheat	plastid	45.08	28.13
HORVU7Hr1G008390.6	Barley	plastid	45.49	26.94
CDY70727	Canola	mitochondrion	24.59	21.51

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	EMBL:ACUP02006610	EnsemblPlantsGene:GLYMA_10G193500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	UniProt:I1LCI3	InterPro:IPR036314	InterPro:IPR036324	EnsemblPlants:KRH34597	ProteinID:KRH34597
ProteinID:KRH34597.1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769
PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI00023CD137

Description

hypothetical protein

Coordinates

chr10:-:42564218..42568587

Molecular Weight (calculated)

27516.6 Da

IEP (calculated)

5.374

GRAVY (calculated)

-0.389

Length

244 amino acids

Sequence
(BLAST)

001: MASLGGLQNL SGINFLIKKE GPKVNAKFEL KPPPYPLNGL EPVMSQQTLE FHWGKHHKTY VENLKKQIVG TELDGKSLEE IIVTSYNKGD ILPAFNNAAQ
101: VWNHDFFWEC MKPGGGGKPS GELLELIERD FGSFEKFLDE FKAAAATQFG SGWAWLAYRA SKFDGENAAN PPSPDEDNKL VVLKSPNAVN PLVWGGYYPL
201: LTIDVWEHAY YLDFQNRRPD YISVFMDKLV SWDAVSSRLE QARL

Best Arabidopsis Sequence Match ( AT4G25100.2 )
(BLAST)

001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA

Arabidopsis Description

FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.